Analysis of interatomic Contacts of Structural Units in PDB entry:
5SY7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5SY7 entry

There are 4 chains in PDB entry 5SY7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 89ASN 463
B
 ARG 59LEU 453
C
 G 1 T 21
D
 C 1 C 21
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 5SY7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
90 114Right-handed alpha
Helix 2
AA2
A
116 122Right-handed alpha
Helix 3
AA3
A
127 141Right-handed alpha
Helix 4
AA4
A
160 173Right-handed alpha
Helix 5
AA5
A
193 198Right-handed alpha
Helix 6
AA6
A
200 205Right-handed alpha
Helix 7
AA7
A
208 213Right-handed alpha
Helix 8
AA8
A
217 223Right-handed alpha
Helix 9
AA9
A
379 384Right-handed alpha
Helix 10
AB1
A
387 391Right-handed 310
Helix 11
AB2
A
395 400Right-handed 310
Helix 12
AB3
A
404 418Right-handed alpha
Helix 13
AB4
B
60 84Right-handed alpha
Helix 14
AB5
B
88 94Right-handed alpha
Helix 15
AB6
B
96 115Right-handed alpha
Helix 16
AB7
B
149 154Right-handed alpha
Helix 17
AB8
B
154 163Right-handed alpha
Helix 18
AB9
B
182 187Right-handed alpha
Helix 19
AC1
B
190 195Right-handed alpha
Helix 20
AC2
B
198 203Right-handed 310
Helix 21
AC3
B
207 215Right-handed alpha
Helix 22
AC4
B
354 359Right-handed alpha
Helix 23
AC5
B
370 374Right-handed 310
Helix 24
AC6
B
379 394Right-handed alpha
Helix 25
AC7
B
449 453Right-handed 310
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There are 5 sheets in PDB entry 5SY7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 189first strand
Strand 2
A
175 179anti-parallel
Strand 3
A
338 343anti-parallel
Strand 4
A
303 310anti-parallel
Strand 5
A
261 268anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 376first strand
Strand 2
A
363 367anti-parallel
Strand 3
A
454 462anti-parallel
Strand 4
A
436 447anti-parallel
Strand 5
A
423 430anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 179first strand
Strand 2
B
165 169anti-parallel
Strand 3
B
317 321anti-parallel
Strand 4
B
288 296anti-parallel
Strand 5
B
265 273anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
348 351first strand
Strand 2
B
337 342anti-parallel
Strand 3
B
431 437anti-parallel
Strand 4
B
411 418anti-parallel
Strand 5
B
395 397anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
348 351first strand
Strand 2
B
337 342anti-parallel
Strand 3
B
431 437anti-parallel
Strand 4
B
411 418anti-parallel
Strand 5
B
401 403anti-parallel
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