Analysis of interatomic Contacts of Structural Units in PDB entry:
5SYC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5SYC entry

There are 2 chains in PDB entry 5SYC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 437
B
 MET 1GLN 436
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 5SYC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 29Right-handed alpha
Helix 2
AA2
A
73 81Right-handed alpha
Helix 3
AA3
A
102 108Right-handed alpha
Helix 4
AA4
A
110 128Right-handed alpha
Helix 5
AA5
A
143 161Right-handed alpha
Helix 6
AA6
A
182 194Right-handed alpha
Helix 7
AA7
A
205 216Right-handed alpha
Helix 8
AA8
A
223 244Right-handed alpha
Helix 9
AA9
A
251 260Right-handed alpha
Helix 10
AB1
A
278 284Right-handed alpha
Helix 11
AB2
A
287 296Right-handed alpha
Helix 12
AB3
A
324 338Right-handed alpha
Helix 13
AB4
A
383 400Right-handed alpha
Helix 14
AB5
A
404 410Right-handed alpha
Helix 15
AB6
A
416 437Right-handed alpha
Helix 16
AB7
B
10 29Right-handed alpha
Helix 17
AB8
B
41 48Right-handed alpha
Helix 18
AB9
B
49 51Right-handed 310
Helix 19
AC1
B
72 81Right-handed alpha
Helix 20
AC2
B
83 87Right-handed 310
Helix 21
AC3
B
88 90Right-handed 310
Helix 22
AC4
B
102 108Right-handed alpha
Helix 23
AC5
B
109 128Right-handed alpha
Helix 24
AC6
B
144 161Right-handed alpha
Helix 25
AC7
B
182 198Right-handed alpha
Helix 26
AC8
B
206 216Right-handed alpha
Helix 27
AC9
B
223 244Right-handed alpha
Helix 28
AD1
B
251 260Right-handed alpha
Helix 29
AD2
B
287 297Right-handed alpha
Helix 30
AD3
B
298 301Right-handed 310
Helix 31
AD4
B
306 310Right-handed 310
Helix 32
AD5
B
324 339Right-handed alpha
Helix 33
AD6
B
340 343Right-handed 310
Helix 34
AD7
B
384 400Right-handed alpha
Helix 35
AD8
B
405 410Right-handed alpha
Helix 36
AD9
B
414 436Right-handed alpha
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There are 5 sheets in PDB entry 5SYC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 94first strand
Strand 2
A
65 69parallel
Strand 3
A
3 9parallel
Strand 4
A
132 140parallel
Strand 5
A
165 171parallel
Strand 6
A
200 204parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 55first strand
Strand 2
A
61 63anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 273first strand
Strand 2
A
373 381anti-parallel
Strand 3
A
312 321anti-parallel
Strand 4
A
351 356parallel
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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 94first strand
Strand 2
B
65 69parallel
Strand 3
B
3 9parallel
Strand 4
B
132 140parallel
Strand 5
B
165 172parallel
Strand 6
B
200 205parallel
Strand 7
B
267 273parallel
Strand 8
B
373 381anti-parallel
Strand 9
B
312 321anti-parallel
Strand 10
B
351 356parallel
Strand 11
B
246 248anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 56first strand
Strand 2
B
60 63anti-parallel
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