Analysis of interatomic Contacts of Structural Units in PDB entry:
5SYG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5SYG entry

There are 2 chains in PDB entry 5SYG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 437
B
 MET 1GLN 436
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 5SYG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 29Right-handed alpha
Helix 2
AA2
A
48 51Right-handed 310
Helix 3
AA3
A
72 81Right-handed alpha
Helix 4
AA4
A
82 85Right-handed 310
Helix 5
AA5
A
102 107Right-handed alpha
Helix 6
AA6
A
110 128Right-handed alpha
Helix 7
AA7
A
143 161Right-handed alpha
Helix 8
AA8
A
182 195Right-handed alpha
Helix 9
AA9
A
205 216Right-handed alpha
Helix 10
AB1
A
223 244Right-handed alpha
Helix 11
AB2
A
251 260Right-handed alpha
Helix 12
AB3
A
279 284Right-handed 310
Helix 13
AB4
A
287 296Right-handed alpha
Helix 14
AB5
A
297 301Right-handed 310
Helix 15
AB6
A
306 310Right-handed 310
Helix 16
AB7
A
324 338Right-handed alpha
Helix 17
AB8
A
383 402Right-handed alpha
Helix 18
AB9
A
405 410Right-handed alpha
Helix 19
AC1
A
416 437Right-handed alpha
Helix 20
AC2
B
10 28Right-handed alpha
Helix 21
AC3
B
41 48Right-handed alpha
Helix 22
AC4
B
49 51Right-handed 310
Helix 23
AC5
B
72 81Right-handed alpha
Helix 24
AC6
B
102 107Right-handed alpha
Helix 25
AC7
B
110 129Right-handed alpha
Helix 26
AC8
B
143 161Right-handed alpha
Helix 27
AC9
B
182 198Right-handed alpha
Helix 28
AD1
B
205 215Right-handed alpha
Helix 29
AD2
B
223 244Right-handed alpha
Helix 30
AD3
B
251 260Right-handed alpha
Helix 31
AD4
B
279 284Right-handed 310
Helix 32
AD5
B
287 296Right-handed alpha
Helix 33
AD6
B
297 301Right-handed 310
Helix 34
AD7
B
324 339Right-handed alpha
Helix 35
AD8
B
340 343Right-handed 310
Helix 36
AD9
B
384 402Right-handed alpha
Helix 37
AE1
B
404 409Right-handed alpha
Helix 38
AE2
B
414 436Right-handed alpha
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There are 5 sheets in PDB entry 5SYG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 94first strand
Strand 2
A
65 69parallel
Strand 3
A
2 9parallel
Strand 4
A
131 140parallel
Strand 5
A
167 171parallel
Strand 6
A
200 202parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 54first strand
Strand 2
A
62 63anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 273first strand
Strand 2
A
373 381anti-parallel
Strand 3
A
312 321anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 94first strand
Strand 2
B
65 69parallel
Strand 3
B
2 9parallel
Strand 4
B
131 140parallel
Strand 5
B
166 171parallel
Strand 6
B
200 204parallel
Strand 7
B
267 270parallel
Strand 8
B
374 381anti-parallel
Strand 9
B
312 320anti-parallel
Strand 10
B
351 356parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 55first strand
Strand 2
B
61 63anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il