Analysis of interatomic Contacts of Structural Units in PDB entry:
5SYN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5SYN entry

There are 4 chains in PDB entry 5SYN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 9VAL 231
B
 PRO 9VAL 231
C
 LEU 10VAL 231
D
 LEU 10VAL 231
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 5SYN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 46Right-handed alpha
Helix 2
AA2
A
65 68Right-handed 310
Helix 3
AA3
A
88 109Right-handed alpha
Helix 4
AA4
A
112 114Right-handed 310
Helix 5
AA5
A
122 134Right-handed alpha
Helix 6
AA6
A
151 155Right-handed 310
Helix 7
AA7
A
160 166Right-handed 310
Helix 8
AA8
A
180 193Right-handed alpha
Helix 9
AA9
A
196 198Right-handed 310
Helix 10
AB1
A
213 228Right-handed alpha
Helix 11
AB2
B
37 46Right-handed alpha
Helix 12
AB3
B
65 68Right-handed 310
Helix 13
AB4
B
88 109Right-handed alpha
Helix 14
AB5
B
112 114Right-handed 310
Helix 15
AB6
B
122 134Right-handed alpha
Helix 16
AB7
B
151 155Right-handed 310
Helix 17
AB8
B
160 164Right-handed 310
Helix 18
AB9
B
180 193Right-handed alpha
Helix 19
AC1
B
196 198Right-handed 310
Helix 20
AC2
B
213 228Right-handed alpha
Helix 21
AC3
C
37 46Right-handed alpha
Helix 22
AC4
C
88 109Right-handed alpha
Helix 23
AC5
C
112 114Right-handed 310
Helix 24
AC6
C
122 134Right-handed alpha
Helix 25
AC7
C
151 155Right-handed 310
Helix 26
AC8
C
180 195Right-handed alpha
Helix 27
AC9
C
196 198Right-handed 310
Helix 28
AD1
C
213 228Right-handed alpha
Helix 29
AD2
D
37 46Right-handed alpha
Helix 30
AD3
D
65 68Right-handed 310
Helix 31
AD4
D
88 109Right-handed alpha
Helix 32
AD5
D
112 114Right-handed 310
Helix 33
AD6
D
122 134Right-handed alpha
Helix 34
AD7
D
151 155Right-handed 310
Helix 35
AD8
D
160 166Right-handed 310
Helix 36
AD9
D
180 192Right-handed alpha
Helix 37
AE1
D
196 198Right-handed 310
Helix 38
AE2
D
213 228Right-handed alpha
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There are 7 sheets in PDB entry 5SYN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 205first strand
Strand 2
A
167 173parallel
Strand 3
A
141 145parallel
Strand 4
A
116 121parallel
Strand 5
A
25 30parallel
Strand 6
A
52 57parallel
Strand 7
A
11 17anti-parallel
Strand 8
B
11 17anti-parallel
Strand 9
B
52 57anti-parallel
Strand 10
B
25 30parallel
Strand 11
B
116 121parallel
Strand 12
B
141 145parallel
Strand 13
B
167 173parallel
Strand 14
B
200 205parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 63first strand
Strand 2
A
71 73anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 63first strand
Strand 2
B
71 73anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
14 17first strand
Strand 2
C
52 57anti-parallel
Strand 3
C
25 30parallel
Strand 4
C
116 121parallel
Strand 5
C
141 145parallel
Strand 6
C
167 173parallel
Strand 7
C
200 205parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
61 63first strand
Strand 2
C
71 73anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
14 17first strand
Strand 2
D
52 57anti-parallel
Strand 3
D
25 30parallel
Strand 4
D
116 121parallel
Strand 5
D
141 145parallel
Strand 6
D
167 173parallel
Strand 7
D
200 205parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
61 63first strand
Strand 2
D
71 73anti-parallel
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