Analysis of interatomic Contacts of Structural Units in PDB entry:
5T04


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5T04 entry

There are 2 chains in PDB entry 5T04 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 43VAL 372
B
 ARG 8LEU 13
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5T04. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
52 56Right-handed 310
Helix 2
AA2
A
60 90Right-handed alpha
Helix 3
AA3
A
101 128Right-handed alpha
Helix 4
AA4
A
137 172Right-handed alpha
Helix 5
AA5
A
182 201Right-handed alpha
Helix 6
AA6
A
203 207Right-handed alpha
Helix 7
AA7
A
230 246Right-handed alpha
Helix 8
AA8
A
246 1011Right-handed alpha
Helix 9
AA9
A
1038 1046Right-handed alpha
Helix 10
AB1
A
1059 1080Right-handed alpha
Helix 11
AB2
A
1084 1091Right-handed alpha
Helix 12
AB3
A
1092 1107Right-handed alpha
Helix 13
AB4
A
1107 1114Right-handed alpha
Helix 14
AB5
A
1115 1123Right-handed alpha
Helix 15
AB6
A
1125 1134Right-handed alpha
Helix 16
AB7
A
1136 1142Right-handed alpha
Helix 17
AB8
A
1142 1156Right-handed alpha
Helix 18
AB9
A
1158 1162Right-handed 310
Helix 19
AC1
A
1165 334Right-handed alpha
Helix 20
AC2
A
335 339Right-handed 310
Helix 21
AC3
A
340 369Right-handed alpha
Helix 22
AC4
A
370 372Right-handed 310
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There are 2 sheets in PDB entry 5T04. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 212first strand
Strand 2
A
223 227anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1014 1019first strand
Strand 2
A
1025 1028anti-parallel
Strand 3
A
1031 1034anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il