Analysis of interatomic Contacts of Structural Units in PDB entry:
5T05

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5T05 entry

There are 2 chains in PDB entry 5T05 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 2	GLU 1383
B	ILE 2	ARG 1390

There are 62 helices in PDB entry 5T05. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	32	Right-handed alpha
Helix 2	AA2	A	42	52	Right-handed alpha
Helix 3	AA3	A	66	73	Right-handed alpha
Helix 4	AA4	A	82	87	Right-handed alpha
Helix 5	AA5	A	90	97	Right-handed alpha
Helix 6	AA6	A	128	130	Right-handed 310
Helix 7	AA7	A	131	141	Right-handed alpha
Helix 8	AA8	A	153	164	Right-handed alpha
Helix 9	AA9	A	185	201	Right-handed alpha
Helix 10	AB1	A	209	219	Right-handed alpha
Helix 11	AB2	A	228	230	Right-handed 310
Helix 12	AB3	A	231	238	Right-handed alpha
Helix 13	AB4	A	272	283	Right-handed alpha
Helix 14	AB5	A	286	297	Right-handed alpha
Helix 15	AB6	A	304	312	Right-handed alpha
Helix 16	AB7	A	314	327	Right-handed alpha
Helix 17	AB8	A	335	352	Right-handed alpha
Helix 18	AB9	A	356	369	Right-handed alpha
Helix 19	AC1	A	1079	1084	Right-handed alpha
Helix 20	AC2	A	1106	1117	Right-handed alpha
Helix 21	AC3	A	1160	1172	Right-handed alpha
Helix 22	AC4	A	1192	1206	Right-handed alpha
Helix 23	AC5	A	1240	1247	Right-handed alpha
Helix 24	AC6	A	1254	1261	Right-handed alpha
Helix 25	AC7	A	1262	1267	Right-handed 310
Helix 26	AC8	A	1275	1294	Right-handed alpha
Helix 27	AC9	A	1302	1315	Right-handed alpha
Helix 28	AD1	A	1328	1333	Right-handed alpha
Helix 29	AD2	A	1336	1347	Right-handed alpha
Helix 30	AD3	A	1347	1381	Right-handed alpha
Helix 31	AD4	B	16	32	Right-handed alpha
Helix 32	AD5	B	42	53	Right-handed alpha
Helix 33	AD6	B	66	73	Right-handed alpha
Helix 34	AD7	B	82	87	Right-handed alpha
Helix 35	AD8	B	90	97	Right-handed alpha
Helix 36	AD9	B	131	142	Right-handed alpha
Helix 37	AE1	B	153	164	Right-handed alpha
Helix 38	AE2	B	185	201	Right-handed alpha
Helix 39	AE3	B	209	219	Right-handed alpha
Helix 40	AE4	B	228	230	Right-handed 310
Helix 41	AE5	B	231	237	Right-handed alpha
Helix 42	AE6	B	272	283	Right-handed alpha
Helix 43	AE7	B	286	297	Right-handed alpha
Helix 44	AE8	B	304	312	Right-handed alpha
Helix 45	AE9	B	314	327	Right-handed alpha
Helix 46	AF1	B	335	352	Right-handed alpha
Helix 47	AF2	B	356	369	Right-handed alpha
Helix 48	AF3	B	1079	1084	Right-handed alpha
Helix 49	AF4	B	1106	1117	Right-handed alpha
Helix 50	AF5	B	1147	1152	Right-handed alpha
Helix 51	AF6	B	1160	1173	Right-handed alpha
Helix 52	AF7	B	1192	1206	Right-handed alpha
Helix 53	AF8	B	1240	1247	Right-handed alpha
Helix 54	AF9	B	1254	1261	Right-handed alpha
Helix 55	AG1	B	1262	1267	Right-handed 310
Helix 56	AG2	B	1270	1274	Right-handed 310
Helix 57	AG3	B	1275	1294	Right-handed alpha
Helix 58	AG4	B	1302	1315	Right-handed alpha
Helix 59	AG5	B	1328	1333	Right-handed alpha
Helix 60	AG6	B	1336	1347	Right-handed alpha
Helix 61	AG7	B	1347	1373	Right-handed alpha
Helix 62	AG8	B	1374	1390	Right-handed alpha

There are 12 sheets in PDB entry 5T05. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	38	first strand
Strand 2	A	7	10	parallel
Strand 3	A	59	63	parallel
Strand 4	A	258	266	anti-parallel
Strand 5	A	106	111	anti-parallel
Strand 6	A	301	302	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	38	first strand
Strand 2	A	7	10	parallel
Strand 3	A	59	63	parallel
Strand 4	A	258	266	anti-parallel
Strand 5	A	328	329	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	99	first strand
Strand 2	A	102	103	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	147	first strand
Strand 2	A	222	227	parallel
Strand 3	A	114	118	anti-parallel
Strand 4	A	242	245	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	172	first strand
Strand 2	A	175	182	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1145	1146	first strand
Strand 2	A	1096	1100	parallel
Strand 3	A	1184	1190	parallel
Strand 4	A	1296	1299	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	38	first strand
Strand 2	B	7	10	parallel
Strand 3	B	59	63	parallel
Strand 4	B	258	266	anti-parallel
Strand 5	B	106	111	anti-parallel
Strand 6	B	301	302	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	38	first strand
Strand 2	B	7	10	parallel
Strand 3	B	59	63	parallel
Strand 4	B	258	266	anti-parallel
Strand 5	B	328	329	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	99	first strand
Strand 2	B	102	103	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	147	first strand
Strand 2	B	222	227	parallel
Strand 3	B	114	118	anti-parallel
Strand 4	B	242	245	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	172	first strand
Strand 2	B	175	182	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1145	1146	first strand
Strand 2	B	1096	1100	parallel
Strand 3	B	1184	1190	parallel
Strand 4	B	1296	1299	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5T05

Analysis of interatomic Contacts of Structural Units in PDB entry:
5T05