Analysis of interatomic Contacts of Structural Units in PDB entry:
5T0D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5T0D entry

There are 6 chains in PDB entry 5T0D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 1	THR 330
B	GLY 1	ILE 173
C	GLY 2	ALA 329
D	GLY 1	ILE 173
E	PRO 1	GLN 327
F	GLY 1	GLY 172

There are 27 helices in PDB entry 5T0D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	58	64	Right-handed alpha
Helix 2	AA2	A	66	73	Right-handed 310
Helix 3	AA3	A	99	108	Right-handed alpha
Helix 4	AA4	A	120	124	Right-handed 310
Helix 5	AA5	A	187	195	Right-handed alpha
Helix 6	AA6	B	37	59	Right-handed alpha
Helix 7	AA7	B	74	127	Right-handed alpha
Helix 8	AA8	B	145	154	Right-handed alpha
Helix 9	AA9	B	162	173	Right-handed alpha
Helix 10	AB1	C	58	65	Right-handed alpha
Helix 11	AB2	C	66	73	Right-handed 310
Helix 12	AB3	C	99	110	Right-handed alpha
Helix 13	AB4	C	120	124	Right-handed 310
Helix 14	AB5	C	187	195	Right-handed alpha
Helix 15	AB6	D	37	59	Right-handed alpha
Helix 16	AB7	D	74	127	Right-handed alpha
Helix 17	AB8	D	145	154	Right-handed alpha
Helix 18	AB9	D	159	161	Right-handed 310
Helix 19	AC1	D	162	171	Right-handed alpha
Helix 20	AC2	E	58	65	Right-handed alpha
Helix 21	AC3	E	66	73	Right-handed 310
Helix 22	AC4	E	99	109	Right-handed alpha
Helix 23	AC5	E	187	195	Right-handed alpha
Helix 24	AC6	F	37	59	Right-handed alpha
Helix 25	AC7	F	74	127	Right-handed alpha
Helix 26	AC8	F	145	155	Right-handed alpha
Helix 27	AC9	F	158	172	Right-handed alpha

There are 32 sheets in PDB entry 5T0D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	36	first strand
Strand 2	B	22	27	anti-parallel
Strand 3	A	4	9	anti-parallel
Strand 4	B	137	140	anti-parallel
Strand 5	B	130	132	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	18	first strand
Strand 2	A	26	27	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	33	first strand
Strand 2	A	317	319	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	36	first strand
Strand 2	A	296	297	parallel
Strand 3	A	309	310	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	45	first strand
Strand 2	A	276	280	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	53	first strand
Strand 2	A	81	82	parallel
Strand 3	A	269	270	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	77	first strand
Strand 2	A	110	116	anti-parallel
Strand 3	A	257	262	anti-parallel
Strand 4	A	176	184	anti-parallel
Strand 5	A	251	254	anti-parallel
Strand 6	A	150	152	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	77	first strand
Strand 2	A	110	116	anti-parallel
Strand 3	A	257	262	anti-parallel
Strand 4	A	176	184	anti-parallel
Strand 5	A	229	237	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	169	first strand
Strand 2	A	242	247	anti-parallel
Strand 3	A	202	205	anti-parallel
Strand 4	A	210	213	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	289	290	first strand
Strand 2	A	283	285	anti-parallel
Strand 3	A	303	305	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	36	first strand
Strand 2	D	22	28	anti-parallel
Strand 3	C	4	9	anti-parallel
Strand 4	D	137	140	anti-parallel
Strand 5	D	130	132	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	18	first strand
Strand 2	C	26	27	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	33	first strand
Strand 2	C	317	319	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	36	first strand
Strand 2	C	296	297	parallel
Strand 3	C	309	310	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	46	first strand
Strand 2	C	276	281	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	53	first strand
Strand 2	C	81	83	parallel
Strand 3	C	269	271	parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	77	first strand
Strand 2	C	112	117	anti-parallel
Strand 3	C	256	261	anti-parallel
Strand 4	C	176	184	anti-parallel
Strand 5	C	251	254	anti-parallel
Strand 6	C	150	152	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	77	first strand
Strand 2	C	112	117	anti-parallel
Strand 3	C	256	261	anti-parallel
Strand 4	C	176	184	anti-parallel
Strand 5	C	229	237	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	128	first strand
Strand 2	C	154	155	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	169	first strand
Strand 2	C	242	247	anti-parallel
Strand 3	C	202	205	anti-parallel
Strand 4	C	210	213	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	288	289	first strand
Strand 2	C	283	285	anti-parallel
Strand 3	C	303	305	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	32	36	first strand
Strand 2	F	22	27	anti-parallel
Strand 3	E	4	9	anti-parallel
Strand 4	F	137	140	anti-parallel
Strand 5	F	130	132	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	17	18	first strand
Strand 2	E	26	27	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	31	33	first strand
Strand 2	E	317	319	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	36	first strand
Strand 2	E	296	297	parallel
Strand 3	E	309	310	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	43	46	first strand
Strand 2	E	276	281	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	52	55	first strand
Strand 2	E	81	83	parallel
Strand 3	E	269	271	parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	77	first strand
Strand 2	E	112	117	anti-parallel
Strand 3	E	256	261	anti-parallel
Strand 4	E	176	184	anti-parallel
Strand 5	E	229	237	anti-parallel
Strand 6	E	95	97	parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	77	first strand
Strand 2	E	112	117	anti-parallel
Strand 3	E	256	261	anti-parallel
Strand 4	E	176	184	anti-parallel
Strand 5	E	251	254	anti-parallel
Strand 6	E	150	152	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	127	128	first strand
Strand 2	E	154	155	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	164	169	first strand
Strand 2	E	242	247	anti-parallel
Strand 3	E	202	206	anti-parallel
Strand 4	E	209	213	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	288	289	first strand
Strand 2	E	283	285	anti-parallel
Strand 3	E	303	305	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5T0D

Analysis of interatomic Contacts of Structural Units in PDB entry:
5T0D