Analysis of interatomic Contacts of Structural Units in PDB entry:
5T0F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5T0F entry

There are 2 chains in PDB entry 5T0F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 51ASN 236
B
 PHE 26SER 57
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 5T0F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
51 61Right-handed alpha
Helix 2
AA2
A
111 130Right-handed alpha
Helix 3
AA3
A
145 154Right-handed alpha
Helix 4
AA4
A
155 157Right-handed 310
Helix 5
AA5
A
163 172Right-handed alpha
Helix 6
AA6
A
180 187Right-handed alpha
Helix 7
AA7
A
189 198Right-handed alpha
Helix 8
AA8
A
224 235Right-handed alpha
Helix 9
AA9
B
35 45Right-handed alpha
Helix 10
AB1
B
47 56Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 5T0F.

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 160first strand
Strand 2
A
85 97anti-parallel
Strand 3
A
69 80anti-parallel
Strand 4
A
211 217anti-parallel
Strand 5
A
202 207anti-parallel
Strand 6
A
176 179anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il