Analysis of interatomic Contacts of Structural Units in PDB entry:
5T0O

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5T0O entry

There are 3 chains in PDB entry 5T0O (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LYS 1033
B	MET 1	LYS 1033
C	MET 1	ARG 1035

There are117 helices in PDB entry 5T0O. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	9	Right-handed alpha
Helix 2	AA2	A	9	30	Right-handed alpha
Helix 3	AA3	A	54	62	Right-handed alpha
Helix 4	AA4	A	62	71	Right-handed alpha
Helix 5	AA5	A	100	116	Right-handed alpha
Helix 6	AA6	A	117	119	Right-handed 310
Helix 7	AA7	A	120	126	Right-handed alpha
Helix 8	AA8	A	152	162	Right-handed alpha
Helix 9	AA9	A	162	170	Right-handed alpha
Helix 10	AB1	A	191	199	Right-handed alpha
Helix 11	AB2	A	201	213	Right-handed alpha
Helix 12	AB3	A	244	250	Right-handed alpha
Helix 13	AB4	A	300	316	Right-handed alpha
Helix 14	AB5	A	331	362	Right-handed alpha
Helix 15	AB6	A	363	372	Right-handed alpha
Helix 16	AB7	A	372	388	Right-handed alpha
Helix 17	AB8	A	393	408	Right-handed alpha
Helix 18	AB9	A	408	423	Right-handed alpha
Helix 19	AC1	A	429	460	Right-handed alpha
Helix 20	AC2	A	464	490	Right-handed alpha
Helix 21	AC3	A	490	500	Right-handed alpha
Helix 22	AC4	A	509	535	Right-handed alpha
Helix 23	AC5	A	535	557	Right-handed alpha
Helix 24	AC6	A	581	598	Right-handed alpha
Helix 25	AC7	A	638	650	Right-handed alpha
Helix 26	AC8	A	686	704	Right-handed alpha
Helix 27	AC9	A	726	733	Right-handed alpha
Helix 28	AD1	A	736	749	Right-handed alpha
Helix 29	AD2	A	775	783	Right-handed alpha
Helix 30	AD3	A	830	846	Right-handed alpha
Helix 31	AD4	A	858	864	Right-handed alpha
Helix 32	AD5	A	866	888	Right-handed alpha
Helix 33	AD6	A	896	898	Right-handed 310
Helix 34	AD7	A	899	914	Right-handed alpha
Helix 35	AD8	A	919	950	Right-handed alpha
Helix 36	AD9	A	954	986	Right-handed alpha
Helix 37	AE1	A	993	1010	Right-handed alpha
Helix 38	AE2	A	1016	1031	Right-handed alpha
Helix 39	AE3	B	2	9	Right-handed alpha
Helix 40	AE4	B	9	31	Right-handed alpha
Helix 41	AE5	B	54	62	Right-handed alpha
Helix 42	AE6	B	62	71	Right-handed alpha
Helix 43	AE7	B	102	115	Right-handed alpha
Helix 44	AE8	B	116	119	Right-handed 310
Helix 45	AE9	B	120	127	Right-handed alpha
Helix 46	AF1	B	153	163	Right-handed alpha
Helix 47	AF2	B	164	168	Right-handed 310
Helix 48	AF3	B	191	198	Right-handed alpha
Helix 49	AF4	B	201	212	Right-handed alpha
Helix 50	AF5	B	244	250	Right-handed alpha
Helix 51	AF6	B	300	318	Right-handed alpha
Helix 52	AF7	B	331	361	Right-handed alpha
Helix 53	AF8	B	363	372	Right-handed alpha
Helix 54	AF9	B	372	389	Right-handed alpha
Helix 55	AG1	B	393	408	Right-handed alpha
Helix 56	AG2	B	408	425	Right-handed alpha
Helix 57	AG3	B	429	462	Right-handed alpha
Helix 58	AG4	B	464	490	Right-handed alpha
Helix 59	AG5	B	490	498	Right-handed alpha
Helix 60	AG6	B	509	535	Right-handed alpha
Helix 61	AG7	B	535	556	Right-handed alpha
Helix 62	AG8	B	581	598	Right-handed alpha
Helix 63	AG9	B	631	635	Right-handed 310
Helix 64	AH1	B	638	650	Right-handed alpha
Helix 65	AH2	B	686	703	Right-handed alpha
Helix 66	AH3	B	728	733	Right-handed alpha
Helix 67	AH4	B	736	746	Right-handed alpha
Helix 68	AH5	B	776	781	Right-handed alpha
Helix 69	AH6	B	830	846	Right-handed alpha
Helix 70	AH7	B	856	864	Right-handed alpha
Helix 71	AH8	B	867	887	Right-handed alpha
Helix 72	AH9	B	892	898	Right-handed alpha
Helix 73	AI1	B	898	915	Right-handed alpha
Helix 74	AI2	B	919	950	Right-handed alpha
Helix 75	AI3	B	954	986	Right-handed alpha
Helix 76	AI4	B	991	1010	Right-handed alpha
Helix 77	AI5	B	1016	1032	Right-handed alpha
Helix 78	AI6	C	2	9	Right-handed alpha
Helix 79	AI7	C	9	30	Right-handed alpha
Helix 80	AI8	C	54	62	Right-handed alpha
Helix 81	AI9	C	62	71	Right-handed alpha
Helix 82	AJ1	C	100	117	Right-handed alpha
Helix 83	AJ2	C	120	125	Right-handed alpha
Helix 84	AJ3	C	153	162	Right-handed alpha
Helix 85	AJ4	C	162	170	Right-handed alpha
Helix 86	AJ5	C	191	199	Right-handed alpha
Helix 87	AJ6	C	201	213	Right-handed alpha
Helix 88	AJ7	C	244	250	Right-handed alpha
Helix 89	AJ8	C	275	279	Right-handed 310
Helix 90	AJ9	C	300	316	Right-handed alpha
Helix 91	AK1	C	317	319	Right-handed 310
Helix 92	AK2	C	331	362	Right-handed alpha
Helix 93	AK3	C	363	372	Right-handed alpha
Helix 94	AK4	C	372	388	Right-handed alpha
Helix 95	AK5	C	393	408	Right-handed alpha
Helix 96	AK6	C	408	425	Right-handed alpha
Helix 97	AK7	C	429	460	Right-handed alpha
Helix 98	AK8	C	464	490	Right-handed alpha
Helix 99	AK9	C	490	500	Right-handed alpha
Helix 100	AL1	C	508	535	Right-handed alpha
Helix 101	AL2	C	535	557	Right-handed alpha
Helix 102	AL3	C	581	599	Right-handed alpha
Helix 103	AL4	C	631	635	Right-handed 310
Helix 104	AL5	C	638	650	Right-handed alpha
Helix 105	AL6	C	686	703	Right-handed alpha
Helix 106	AL7	C	726	733	Right-handed alpha
Helix 107	AL8	C	736	746	Right-handed alpha
Helix 108	AL9	C	778	783	Right-handed alpha
Helix 109	AM1	C	830	846	Right-handed alpha
Helix 110	AM2	C	855	864	Right-handed alpha
Helix 111	AM3	C	867	888	Right-handed alpha
Helix 112	AM4	C	892	897	Right-handed alpha
Helix 113	AM5	C	899	914	Right-handed alpha
Helix 114	AM6	C	919	951	Right-handed alpha
Helix 115	AM7	C	954	986	Right-handed alpha
Helix 116	AM8	C	991	1010	Right-handed alpha
Helix 117	AM9	C	1011	1033	Right-handed alpha

There are 26 sheets in PDB entry 5T0O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	132	first strand
Strand 2	A	43	49	anti-parallel
Strand 3	A	88	95	anti-parallel
Strand 4	A	76	84	anti-parallel
Strand 5	A	809	813	anti-parallel
Strand 6	A	816	825	anti-parallel
Strand 7	A	707	712	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	132	first strand
Strand 2	A	43	49	anti-parallel
Strand 3	A	88	95	anti-parallel
Strand 4	A	76	84	anti-parallel
Strand 5	A	809	813	anti-parallel
Strand 6	A	816	825	anti-parallel
Strand 7	A	675	681	anti-parallel
Strand 8	A	850	855	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	178	first strand
Strand 2	A	289	295	anti-parallel
Strand 3	A	137	145	anti-parallel
Strand 4	A	323	330	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	268	272	first strand
Strand 2	A	186	190	anti-parallel
Strand 3	A	761	769	parallel
Strand 4	A	751	758	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	221	first strand
Strand 2	A	234	239	anti-parallel
Strand 3	B	718	725	parallel
Strand 4	B	799	806	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	255	first strand
Strand 2	A	261	263	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	286	287	first strand
Strand 2	A	280	283	anti-parallel
Strand 3	A	602	609	anti-parallel
Strand 4	A	622	629	anti-parallel
Strand 5	A	569	575	anti-parallel
Strand 6	A	657	662	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	799	806	first strand
Strand 2	A	718	725	anti-parallel
Strand 3	C	234	237	parallel
Strand 4	C	218	221	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	784	786	first strand
Strand 2	A	792	794	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	133	first strand
Strand 2	B	43	49	anti-parallel
Strand 3	B	88	95	anti-parallel
Strand 4	B	76	84	anti-parallel
Strand 5	B	809	813	anti-parallel
Strand 6	B	817	825	anti-parallel
Strand 7	B	707	712	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	133	first strand
Strand 2	B	43	49	anti-parallel
Strand 3	B	88	95	anti-parallel
Strand 4	B	76	84	anti-parallel
Strand 5	B	809	813	anti-parallel
Strand 6	B	817	825	anti-parallel
Strand 7	B	675	681	anti-parallel
Strand 8	B	850	854	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	178	first strand
Strand 2	B	289	295	anti-parallel
Strand 3	B	137	145	anti-parallel
Strand 4	B	323	330	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	268	272	first strand
Strand 2	B	185	190	anti-parallel
Strand 3	B	761	769	parallel
Strand 4	B	751	758	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	220	first strand
Strand 2	B	235	239	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	255	first strand
Strand 2	B	261	263	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	283	first strand
Strand 2	B	602	612	anti-parallel
Strand 3	B	617	629	anti-parallel
Strand 4	B	569	575	anti-parallel
Strand 5	B	657	661	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	784	786	first strand
Strand 2	B	792	794	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	131	first strand
Strand 2	C	43	49	anti-parallel
Strand 3	C	88	95	anti-parallel
Strand 4	C	76	84	anti-parallel
Strand 5	C	811	813	anti-parallel
Strand 6	C	816	825	anti-parallel
Strand 7	C	707	712	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	131	first strand
Strand 2	C	43	49	anti-parallel
Strand 3	C	88	95	anti-parallel
Strand 4	C	76	84	anti-parallel
Strand 5	C	811	813	anti-parallel
Strand 6	C	816	825	anti-parallel
Strand 7	C	675	681	anti-parallel
Strand 8	C	850	854	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	178	first strand
Strand 2	C	287	293	anti-parallel
Strand 3	C	139	145	anti-parallel
Strand 4	C	323	326	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	178	first strand
Strand 2	C	287	293	anti-parallel
Strand 3	C	280	283	anti-parallel
Strand 4	C	602	609	anti-parallel
Strand 5	C	622	629	anti-parallel
Strand 6	C	569	575	anti-parallel
Strand 7	C	657	661	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	268	270	first strand
Strand 2	C	185	190	anti-parallel
Strand 3	C	761	769	parallel
Strand 4	C	751	758	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	252	255	first strand
Strand 2	C	261	263	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	718	719	first strand
Strand 2	C	805	806	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	722	725	first strand
Strand 2	C	799	802	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	784	786	first strand
Strand 2	C	792	794	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5T0O

Analysis of interatomic Contacts of Structural Units in PDB entry:
5T0O