Analysis of interatomic Contacts of Structural Units in PDB entry:
5T0Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5T0Z entry

There are 4 chains in PDB entry 5T0Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 12ALA 179
B
 SER 12THR 180
C
 SER 12ALA 178
D
 SER 12ALA 178
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 5T0Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
50 66Right-handed alpha
Helix 2
AA2
A
90 104Right-handed alpha
Helix 3
AA3
A
158 178Right-handed alpha
Helix 4
AA4
B
50 66Right-handed alpha
Helix 5
AA5
B
90 104Right-handed alpha
Helix 6
AA6
B
158 179Right-handed alpha
Helix 7
AA7
C
50 66Right-handed alpha
Helix 8
AA8
C
90 104Right-handed alpha
Helix 9
AA9
C
158 177Right-handed alpha
Helix 10
AB1
D
50 66Right-handed alpha
Helix 11
AB2
D
90 104Right-handed alpha
Helix 12
AB3
D
158 176Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5T0Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 44first strand
Strand 2
A
108 121parallel
Strand 3
A
125 137anti-parallel
Strand 4
A
142 152anti-parallel
Strand 5
A
17 25anti-parallel
Strand 6
D
17 25anti-parallel
Strand 7
D
143 152anti-parallel
Strand 8
D
125 137anti-parallel
Strand 9
D
108 121anti-parallel
Strand 10
D
43 44parallel
Back to list of sheets
Back to top of page

There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 73first strand
Strand 2
A
37 39parallel
Strand 3
A
108 121parallel
Strand 4
A
125 137anti-parallel
Strand 5
A
142 152anti-parallel
Strand 6
A
17 25anti-parallel
Strand 7
D
17 25anti-parallel
Strand 8
D
143 152anti-parallel
Strand 9
D
125 137anti-parallel
Strand 10
D
108 121anti-parallel
Strand 11
D
37 39parallel
Strand 12
D
71 72parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 44first strand
Strand 2
B
108 121parallel
Strand 3
B
125 137anti-parallel
Strand 4
B
142 152anti-parallel
Strand 5
B
17 25anti-parallel
Strand 6
C
17 25anti-parallel
Strand 7
C
142 152anti-parallel
Strand 8
C
125 137anti-parallel
Strand 9
C
108 121anti-parallel
Strand 10
C
43 44parallel
Back to list of sheets
Back to top of page

There are 12 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 72first strand
Strand 2
B
37 39parallel
Strand 3
B
108 121parallel
Strand 4
B
125 137anti-parallel
Strand 5
B
142 152anti-parallel
Strand 6
B
17 25anti-parallel
Strand 7
C
17 25anti-parallel
Strand 8
C
142 152anti-parallel
Strand 9
C
125 137anti-parallel
Strand 10
C
108 121anti-parallel
Strand 11
C
37 39parallel
Strand 12
C
71 73parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il