Analysis of interatomic Contacts of Structural Units in PDB entry:
5T13


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5T13 entry

There is 1 chain in PDB entry 5T13 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -5ALA 370
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5T13. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 25Right-handed alpha
Helix 2
AA2
A
29 31Right-handed 310
Helix 3
AA3
A
49 67Right-handed alpha
Helix 4
AA4
A
69 77Right-handed alpha
Helix 5
AA5
A
125 129Right-handed 310
Helix 6
AA6
A
131 149Right-handed alpha
Helix 7
AA7
A
153 155Right-handed 310
Helix 8
AA8
A
168 178Right-handed alpha
Helix 9
AA9
A
186 206Right-handed alpha
Helix 10
AB1
A
210 214Right-handed 310
Helix 11
AB2
A
215 219Right-handed 310
Helix 12
AB3
A
268 279Right-handed alpha
Helix 13
AB4
A
288 294Right-handed alpha
Helix 14
AB5
A
324 342Right-handed alpha
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There are 4 sheets in PDB entry 5T13. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 83first strand
Strand 2
A
33 40parallel
Strand 3
A
92 106anti-parallel
Strand 4
A
-2 9anti-parallel
Strand 5
A
252 253parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 120first strand
Strand 2
A
242 249anti-parallel
Strand 3
A
157 164anti-parallel
Strand 4
A
230 234parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 263first strand
Strand 2
A
361 368anti-parallel
Strand 3
A
295 302anti-parallel
Strand 4
A
347 350parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 310first strand
Strand 2
A
313 314anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il