Analysis of interatomic Contacts of Structural Units in PDB entry:
5T16

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5T16 entry

There are 20 chains in PDB entry 5T16 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 184	SER 459
B	TYR 184	ASP 457
C	SER 42	LYS 154
D	ASN 43	ARG 158
E	ASN 43	LYS 157
F	ASN 43	LYS 157
G	G 1	C 2
G	A 4	G 34
H	G 1	C 2
H	A 4	G 34
I	TYR 184	SER 459
J	ASP 185	ASP 457
K	SER 42	ARG 155
L	ASN 43	ARG 158
M	ILE 41	GLN 152
N	ASN 43	GLU 159
O	G 1	C 2
O	A 4	G 34
P	G 1	C 2
P	A 4	G 34

There are119 helices in PDB entry 5T16. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	207	214	Right-handed alpha
Helix 2	AA2	A	215	216	Right-handed 310
Helix 3	AA3	A	217	221	Right-handed 310
Helix 4	AA4	A	228	234	Right-handed alpha
Helix 5	AA5	A	237	260	Right-handed alpha
Helix 6	AA6	A	264	277	Right-handed alpha
Helix 7	AA7	A	277	288	Right-handed alpha
Helix 8	AA8	A	289	294	Right-handed alpha
Helix 9	AA9	A	312	330	Right-handed alpha
Helix 10	AB1	A	330	357	Right-handed alpha
Helix 11	AB2	A	369	379	Right-handed alpha
Helix 12	AB3	A	380	384	Right-handed 310
Helix 13	AB4	A	419	434	Right-handed alpha
Helix 14	AB5	A	434	448	Right-handed alpha
Helix 15	AB6	B	207	214	Right-handed alpha
Helix 16	AB7	B	215	216	Right-handed 310
Helix 17	AB8	B	217	221	Right-handed 310
Helix 18	AB9	B	228	234	Right-handed alpha
Helix 19	AC1	B	237	260	Right-handed alpha
Helix 20	AC2	B	264	277	Right-handed alpha
Helix 21	AC3	B	277	288	Right-handed alpha
Helix 22	AC4	B	289	294	Right-handed alpha
Helix 23	AC5	B	305	309	Right-handed 310
Helix 24	AC6	B	312	330	Right-handed alpha
Helix 25	AC7	B	330	356	Right-handed alpha
Helix 26	AC8	B	369	379	Right-handed alpha
Helix 27	AC9	B	380	384	Right-handed 310
Helix 28	AD1	B	419	434	Right-handed alpha
Helix 29	AD2	B	434	447	Right-handed alpha
Helix 30	AD3	B	449	454	Right-handed alpha
Helix 31	AD4	C	45	70	Right-handed alpha
Helix 32	AD5	C	72	82	Right-handed alpha
Helix 33	AD6	C	83	86	Right-handed 310
Helix 34	AD7	C	87	96	Right-handed 310
Helix 35	AD8	C	97	111	Right-handed alpha
Helix 36	AD9	C	115	127	Right-handed alpha
Helix 37	AE1	C	140	153	Right-handed alpha
Helix 38	AE2	D	45	70	Right-handed alpha
Helix 39	AE3	D	72	82	Right-handed alpha
Helix 40	AE4	D	87	89	Right-handed 310
Helix 41	AE5	D	90	95	Right-handed alpha
Helix 42	AE6	D	96	112	Right-handed alpha
Helix 43	AE7	D	115	127	Right-handed alpha
Helix 44	AE8	D	140	158	Right-handed alpha
Helix 45	AE9	E	45	70	Right-handed alpha
Helix 46	AF1	E	72	82	Right-handed alpha
Helix 47	AF2	E	87	95	Right-handed 310
Helix 48	AF3	E	96	111	Right-handed alpha
Helix 49	AF4	E	115	127	Right-handed alpha
Helix 50	AF5	E	140	157	Right-handed alpha
Helix 51	AF6	F	45	70	Right-handed alpha
Helix 52	AF7	F	72	82	Right-handed alpha
Helix 53	AF8	F	87	89	Right-handed 310
Helix 54	AF9	F	90	95	Right-handed alpha
Helix 55	AG1	F	96	111	Right-handed alpha
Helix 56	AG2	F	115	127	Right-handed alpha
Helix 57	AG3	F	143	157	Right-handed alpha
Helix 58	AG4	I	207	214	Right-handed alpha
Helix 59	AG5	I	215	216	Right-handed 310
Helix 60	AG6	I	217	221	Right-handed 310
Helix 61	AG7	I	228	234	Right-handed alpha
Helix 62	AG8	I	237	260	Right-handed alpha
Helix 63	AG9	I	264	277	Right-handed alpha
Helix 64	AH1	I	277	288	Right-handed alpha
Helix 65	AH2	I	289	294	Right-handed alpha
Helix 66	AH3	I	305	310	Right-handed 310
Helix 67	AH4	I	312	330	Right-handed alpha
Helix 68	AH5	I	330	357	Right-handed alpha
Helix 69	AH6	I	369	379	Right-handed alpha
Helix 70	AH7	I	380	384	Right-handed 310
Helix 71	AH8	I	419	434	Right-handed alpha
Helix 72	AH9	I	434	448	Right-handed alpha
Helix 73	AI1	I	449	454	Right-handed alpha
Helix 74	AI2	J	207	215	Right-handed alpha
Helix 75	AI3	J	216	221	Right-handed 310
Helix 76	AI4	J	228	234	Right-handed alpha
Helix 77	AI5	J	237	260	Right-handed alpha
Helix 78	AI6	J	264	277	Right-handed alpha
Helix 79	AI7	J	277	288	Right-handed alpha
Helix 80	AI8	J	289	294	Right-handed alpha
Helix 81	AI9	J	305	309	Right-handed 310
Helix 82	AJ1	J	312	330	Right-handed alpha
Helix 83	AJ2	J	330	357	Right-handed alpha
Helix 84	AJ3	J	369	379	Right-handed alpha
Helix 85	AJ4	J	380	384	Right-handed 310
Helix 86	AJ5	J	419	434	Right-handed alpha
Helix 87	AJ6	J	434	447	Right-handed alpha
Helix 88	AJ7	J	449	454	Right-handed alpha
Helix 89	AJ8	K	45	70	Right-handed alpha
Helix 90	AJ9	K	72	82	Right-handed alpha
Helix 91	AK1	K	83	86	Right-handed 310
Helix 92	AK2	K	87	96	Right-handed 310
Helix 93	AK3	K	97	111	Right-handed alpha
Helix 94	AK4	K	115	124	Right-handed alpha
Helix 95	AK5	K	125	127	Right-handed 310
Helix 96	AK6	K	140	153	Right-handed alpha
Helix 97	AK7	L	45	70	Right-handed alpha
Helix 98	AK8	L	72	82	Right-handed alpha
Helix 99	AK9	L	83	86	Right-handed 310
Helix 100	AL1	L	87	89	Right-handed 310
Helix 101	AL2	L	90	95	Right-handed alpha
Helix 102	AL3	L	96	112	Right-handed alpha
Helix 103	AL4	L	115	127	Right-handed alpha
Helix 104	AL5	L	140	157	Right-handed alpha
Helix 105	AL6	M	45	70	Right-handed alpha
Helix 106	AL7	M	72	82	Right-handed alpha
Helix 107	AL8	M	83	86	Right-handed 310
Helix 108	AL9	M	87	96	Right-handed 310
Helix 109	AM1	M	97	111	Right-handed alpha
Helix 110	AM2	M	115	127	Right-handed alpha
Helix 111	AM3	M	140	151	Right-handed alpha
Helix 112	AM4	N	45	70	Right-handed alpha
Helix 113	AM5	N	72	82	Right-handed alpha
Helix 114	AM6	N	87	89	Right-handed 310
Helix 115	AM7	N	90	95	Right-handed alpha
Helix 116	AM8	N	96	111	Right-handed alpha
Helix 117	AM9	N	115	127	Right-handed alpha
Helix 118	AN1	N	140	154	Right-handed alpha
Helix 119	AN2	N	155	159	Right-handed 310

There are 4 sheets in PDB entry 5T16. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	386	391	first strand
Strand 2	A	400	405	anti-parallel
Strand 3	A	411	417	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	386	391	first strand
Strand 2	B	400	405	anti-parallel
Strand 3	B	411	417	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	386	391	first strand
Strand 2	I	400	405	anti-parallel
Strand 3	I	411	417	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	386	391	first strand
Strand 2	J	400	405	anti-parallel
Strand 3	J	411	417	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5T16

Analysis of interatomic Contacts of Structural Units in PDB entry:
5T16