Analysis of interatomic Contacts of Structural Units in PDB entry:
5T1F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5T1F entry

There is 1 chain in PDB entry 5T1F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 431
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 5T1F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 8Right-handed 310
Helix 2
AA2
A
17 30Right-handed alpha
Helix 3
AA3
A
33 35Right-handed 310
Helix 4
AA4
A
67 82Right-handed alpha
Helix 5
AA5
A
85 87Right-handed 310
Helix 6
AA6
A
100 117Right-handed alpha
Helix 7
AA7
A
119 121Right-handed 310
Helix 8
AA8
A
128 136Right-handed alpha
Helix 9
AA9
A
159 175Right-handed alpha
Helix 10
AB1
A
182 184Right-handed 310
Helix 11
AB2
A
216 218Right-handed 310
Helix 12
AB3
A
219 224Right-handed alpha
Helix 13
AB4
A
243 250Right-handed alpha
Helix 14
AB5
A
314 329Right-handed alpha
Helix 15
AB6
A
330 333Right-handed 310
Helix 16
AB7
A
374 378Right-handed 310
Helix 17
AB8
A
380 390Right-handed alpha
Helix 18
AB9
A
394 401Right-handed alpha
Helix 19
AC1
A
423 425Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 5T1F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 180first strand
Strand 2
A
37 41parallel
Strand 3
A
10 13parallel
Strand 4
A
211 214parallel
Strand 5
A
364 368parallel
Strand 6
A
354 357anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 59first strand
Strand 2
A
156 158anti-parallel
Strand 3
A
89 90anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 126first strand
Strand 2
A
148 152anti-parallel
Strand 3
A
94 98anti-parallel
Strand 4
A
255 258parallel
Strand 5
A
262 264anti-parallel
Strand 6
A
272 276anti-parallel
Strand 7
A
231 241anti-parallel
Strand 8
A
338 347anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 192first strand
Strand 2
A
195 201anti-parallel
Strand 3
A
206 208anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 283first strand
Strand 2
A
420 421parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 287first strand
Strand 2
A
298 300anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il