Analysis of interatomic Contacts of Structural Units in PDB entry:
5T1J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5T1J entry

There are 6 chains in PDB entry 5T1J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 136ASN 327
B
 LYS 136ASN 327
C
 A 501 T 524
D
 A 501 T 524
E
 A 501 T 524
F
 A 501 T 524
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5T1J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
143 153Right-handed alpha
Helix 2
AA2
A
229 235Right-handed alpha
Helix 3
AA3
A
295 298Right-handed 310
Helix 4
AA4
A
307 318Right-handed alpha
Helix 5
AA5
A
321 325Right-handed 310
Helix 6
AA6
B
143 152Right-handed alpha
Helix 7
AA7
B
229 234Right-handed alpha
Helix 8
AA8
B
295 298Right-handed 310
Helix 9
AA9
B
307 318Right-handed alpha
Helix 10
AB1
B
319 325Right-handed 310
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There are 10 sheets in PDB entry 5T1J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 141first strand
Strand 2
A
171 174anti-parallel
Strand 3
A
237 238anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 158first strand
Strand 2
A
299 302parallel
Strand 3
A
265 274anti-parallel
Strand 4
A
182 193anti-parallel
Strand 5
A
227 228anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 221first strand
Strand 2
A
182 193anti-parallel
Strand 3
A
265 274anti-parallel
Strand 4
A
291 293anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 165first strand
Strand 2
A
243 245anti-parallel
Strand 3
A
258 259parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 200first strand
Strand 2
A
203 207anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
138 141first strand
Strand 2
B
171 175anti-parallel
Strand 3
B
237 238anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 158first strand
Strand 2
B
299 302parallel
Strand 3
B
265 274anti-parallel
Strand 4
B
182 193anti-parallel
Strand 5
B
227 228anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
220 221first strand
Strand 2
B
182 193anti-parallel
Strand 3
B
265 274anti-parallel
Strand 4
B
292 293anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 165first strand
Strand 2
B
243 245anti-parallel
Strand 3
B
258 259parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 200first strand
Strand 2
B
203 207anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il