Analysis of interatomic Contacts of Structural Units in PDB entry:
5T1O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5T1O entry

There are 2 chains in PDB entry 5T1O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 85
B
 ARG 170ASN 424
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5T1O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 30Right-handed alpha
Helix 2
AA2
A
48 57Right-handed alpha
Helix 3
AA3
A
71 84Right-handed alpha
Helix 4
AA4
B
193 197Right-handed 310
Helix 5
AA5
B
204 232Right-handed alpha
Helix 6
AA6
B
235 251Right-handed alpha
Helix 7
AA7
B
251 263Right-handed alpha
Helix 8
AA8
B
267 286Right-handed alpha
Helix 9
AA9
B
288 293Right-handed alpha
Helix 10
AB1
B
293 309Right-handed alpha
Helix 11
AB2
B
331 336Right-handed alpha
Helix 12
AB3
B
337 338Right-handed 310
Helix 13
AB4
B
339 341Right-handed 310
Helix 14
AB5
B
355 365Right-handed alpha
Helix 15
AB6
B
375 379Right-handed 310
Helix 16
AB7
B
398 411Right-handed alpha
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There are 2 sheets in PDB entry 5T1O. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 8first strand
Strand 2
A
62 68anti-parallel
Strand 3
A
33 37anti-parallel
Strand 4
A
43 45anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
171 172first strand
Strand 2
B
392 395anti-parallel
Strand 3
B
383 387anti-parallel
Strand 4
B
180 186anti-parallel
Strand 5
B
323 327parallel
Strand 6
B
343 348parallel
Strand 7
B
368 370parallel
Strand 8
B
174 177anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il