Analysis of interatomic Contacts of Structural Units in PDB entry:
5T1P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5T1P entry

There are 4 chains in PDB entry 5T1P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 22	LYS 348
B	ILE 22	MSE 347
C	ASP 23	LYS 348
D	GLN 20	LEU 311

There are144 helices in PDB entry 5T1P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	34	Right-handed alpha
Helix 2	AA2	A	47	60	Right-handed alpha
Helix 3	AA3	A	69	81	Right-handed alpha
Helix 4	AA4	A	95	102	Right-handed alpha
Helix 5	AA5	A	112	116	Right-handed 310
Helix 6	AA6	A	117	121	Right-handed 310
Helix 7	AA7	A	150	155	Right-handed alpha
Helix 8	AA8	A	169	183	Right-handed alpha
Helix 9	AA9	A	190	203	Right-handed alpha
Helix 10	AB1	A	212	218	Right-handed alpha
Helix 11	AB2	A	228	239	Right-handed alpha
Helix 12	AB3	A	267	280	Right-handed alpha
Helix 13	AB4	A	280	290	Right-handed alpha
Helix 14	AB5	A	296	300	Right-handed 310
Helix 15	AB6	A	305	310	Right-handed alpha
Helix 16	AB7	A	312	317	Right-handed 310
Helix 17	AB8	A	324	343	Right-handed alpha
Helix 18	AB9	A	344	347	Right-handed 310
Helix 19	AC1	B	23	34	Right-handed alpha
Helix 20	AC2	B	47	60	Right-handed alpha
Helix 21	AC3	B	69	81	Right-handed alpha
Helix 22	AC4	B	95	102	Right-handed alpha
Helix 23	AC5	B	112	116	Right-handed 310
Helix 24	AC6	B	117	121	Right-handed 310
Helix 25	AC7	B	150	157	Right-handed alpha
Helix 26	AC8	B	169	183	Right-handed alpha
Helix 27	AC9	B	190	203	Right-handed alpha
Helix 28	AD1	B	212	218	Right-handed alpha
Helix 29	AD2	B	228	239	Right-handed alpha
Helix 30	AD3	B	267	280	Right-handed alpha
Helix 31	AD4	B	280	290	Right-handed alpha
Helix 32	AD5	B	296	300	Right-handed 310
Helix 33	AD6	B	306	310	Right-handed 310
Helix 34	AD7	B	312	317	Right-handed 310
Helix 35	AD8	B	324	343	Right-handed alpha
Helix 36	AD9	B	344	347	Right-handed 310
Helix 37	AE1	C	24	34	Right-handed alpha
Helix 38	AE2	C	47	60	Right-handed alpha
Helix 39	AE3	C	69	80	Right-handed alpha
Helix 40	AE4	C	94	102	Right-handed alpha
Helix 41	AE5	C	112	116	Right-handed 310
Helix 42	AE6	C	117	121	Right-handed 310
Helix 43	AE7	C	150	157	Right-handed alpha
Helix 44	AE8	C	169	183	Right-handed alpha
Helix 45	AE9	C	190	203	Right-handed alpha
Helix 46	AF1	C	212	218	Right-handed alpha
Helix 47	AF2	C	228	239	Right-handed alpha
Helix 48	AF3	C	267	280	Right-handed alpha
Helix 49	AF4	C	280	290	Right-handed alpha
Helix 50	AF5	C	296	300	Right-handed 310
Helix 51	AF6	C	306	310	Right-handed 310
Helix 52	AF7	C	312	317	Right-handed 310
Helix 53	AF8	C	324	343	Right-handed alpha
Helix 54	AF9	C	344	347	Right-handed 310
Helix 55	AG1	D	23	34	Right-handed alpha
Helix 56	AG2	D	47	60	Right-handed alpha
Helix 57	AG3	D	69	81	Right-handed alpha
Helix 58	AG4	D	95	103	Right-handed alpha
Helix 59	AG5	D	112	116	Right-handed 310
Helix 60	AG6	D	117	121	Right-handed 310
Helix 61	AG7	D	150	157	Right-handed alpha
Helix 62	AG8	D	169	183	Right-handed alpha
Helix 63	AG9	D	190	204	Right-handed alpha
Helix 64	AH1	D	212	218	Right-handed alpha
Helix 65	AH2	D	228	239	Right-handed alpha
Helix 66	AH3	D	267	280	Right-handed alpha
Helix 67	AH4	D	280	290	Right-handed alpha
Helix 68	AH5	D	296	300	Right-handed 310
Helix 69	AH6	D	305	310	Right-handed alpha
Helix 70	AH7	D	312	317	Right-handed 310
Helix 71	AH8	D	324	343	Right-handed alpha
Helix 72	AH9	D	344	347	Right-handed 310
Helix 73	AI1	E	23	34	Right-handed alpha
Helix 74	AI2	E	47	60	Right-handed alpha
Helix 75	AI3	E	69	80	Right-handed alpha
Helix 76	AI4	E	94	102	Right-handed alpha
Helix 77	AI5	E	112	116	Right-handed 310
Helix 78	AI6	E	117	121	Right-handed 310
Helix 79	AI7	E	150	155	Right-handed alpha
Helix 80	AI8	E	169	183	Right-handed alpha
Helix 81	AI9	E	190	204	Right-handed alpha
Helix 82	AJ1	E	212	218	Right-handed alpha
Helix 83	AJ2	E	228	239	Right-handed alpha
Helix 84	AJ3	E	267	280	Right-handed alpha
Helix 85	AJ4	E	280	290	Right-handed alpha
Helix 86	AJ5	E	296	300	Right-handed 310
Helix 87	AJ6	E	303	308	Right-handed alpha
Helix 88	AJ7	E	312	317	Right-handed 310
Helix 89	AJ8	E	324	343	Right-handed alpha
Helix 90	AJ9	E	344	347	Right-handed 310
Helix 91	AK1	F	23	34	Right-handed alpha
Helix 92	AK2	F	47	60	Right-handed alpha
Helix 93	AK3	F	69	80	Right-handed alpha
Helix 94	AK4	F	94	102	Right-handed alpha
Helix 95	AK5	F	112	116	Right-handed 310
Helix 96	AK6	F	117	121	Right-handed 310
Helix 97	AK7	F	150	157	Right-handed alpha
Helix 98	AK8	F	169	183	Right-handed alpha
Helix 99	AK9	F	190	203	Right-handed alpha
Helix 100	AL1	F	212	218	Right-handed alpha
Helix 101	AL2	F	228	239	Right-handed alpha
Helix 102	AL3	F	267	280	Right-handed alpha
Helix 103	AL4	F	280	290	Right-handed alpha
Helix 104	AL5	F	296	300	Right-handed 310
Helix 105	AL6	F	303	308	Right-handed alpha
Helix 106	AL7	F	312	317	Right-handed 310
Helix 107	AL8	F	324	343	Right-handed alpha
Helix 108	AL9	F	344	347	Right-handed 310
Helix 109	AM1	G	23	34	Right-handed alpha
Helix 110	AM2	G	47	60	Right-handed alpha
Helix 111	AM3	G	69	80	Right-handed alpha
Helix 112	AM4	G	94	102	Right-handed alpha
Helix 113	AM5	G	112	116	Right-handed 310
Helix 114	AM6	G	117	121	Right-handed 310
Helix 115	AM7	G	150	157	Right-handed alpha
Helix 116	AM8	G	169	183	Right-handed alpha
Helix 117	AM9	G	190	204	Right-handed alpha
Helix 118	AN1	G	212	218	Right-handed alpha
Helix 119	AN2	G	228	239	Right-handed alpha
Helix 120	AN3	G	267	280	Right-handed alpha
Helix 121	AN4	G	280	290	Right-handed alpha
Helix 122	AN5	G	296	300	Right-handed 310
Helix 123	AN6	G	303	308	Right-handed alpha
Helix 124	AN7	G	312	317	Right-handed 310
Helix 125	AN8	G	324	343	Right-handed alpha
Helix 126	AN9	G	344	347	Right-handed 310
Helix 127	AO1	H	23	34	Right-handed alpha
Helix 128	AO2	H	47	60	Right-handed alpha
Helix 129	AO3	H	69	80	Right-handed alpha
Helix 130	AO4	H	93	102	Right-handed alpha
Helix 131	AO5	H	112	116	Right-handed 310
Helix 132	AO6	H	117	121	Right-handed 310
Helix 133	AO7	H	150	157	Right-handed alpha
Helix 134	AO8	H	169	183	Right-handed alpha
Helix 135	AO9	H	190	203	Right-handed alpha
Helix 136	AP1	H	212	218	Right-handed alpha
Helix 137	AP2	H	228	239	Right-handed alpha
Helix 138	AP3	H	267	280	Right-handed alpha
Helix 139	AP4	H	280	290	Right-handed alpha
Helix 140	AP5	H	296	300	Right-handed 310
Helix 141	AP6	H	303	308	Right-handed alpha
Helix 142	AP7	H	312	317	Right-handed 310
Helix 143	AP8	H	324	343	Right-handed alpha
Helix 144	AP9	H	344	347	Right-handed 310

There are 36 sheets in PDB entry 5T1P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	39	first strand
Strand 2	A	62	66	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	207	first strand
Strand 2	A	161	162	parallel
Strand 3	A	223	227	parallel
Strand 4	A	129	140	anti-parallel
Strand 5	A	243	246	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	246	first strand
Strand 2	A	129	140	anti-parallel
Strand 3	A	252	262	anti-parallel
Strand 4	A	105	106	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	106	first strand
Strand 2	A	252	262	anti-parallel
Strand 3	A	319	321	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	92	first strand
Strand 2	A	252	262	anti-parallel
Strand 3	A	319	321	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	293	294	first strand
Strand 2	A	129	140	anti-parallel
Strand 3	A	252	262	anti-parallel
Strand 4	A	88	92	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	39	first strand
Strand 2	B	62	66	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	92	first strand
Strand 2	B	252	261	anti-parallel
Strand 3	B	129	140	anti-parallel
Strand 4	B	243	246	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	319	321	first strand
Strand 2	B	252	261	parallel
Strand 3	B	129	140	anti-parallel
Strand 4	B	223	227	anti-parallel
Strand 5	B	161	162	parallel
Strand 6	B	206	207	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	293	294	first strand
Strand 2	B	129	140	anti-parallel
Strand 3	B	223	227	anti-parallel
Strand 4	B	161	162	parallel
Strand 5	B	206	207	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	206	207	first strand
Strand 2	C	161	162	parallel
Strand 3	C	223	227	parallel
Strand 4	C	129	140	anti-parallel
Strand 5	C	293	294	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	293	294	first strand
Strand 2	C	129	140	anti-parallel
Strand 3	C	243	246	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	243	246	first strand
Strand 2	C	129	140	anti-parallel
Strand 3	C	252	262	anti-parallel
Strand 4	C	319	320	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	319	320	first strand
Strand 2	C	252	262	parallel
Strand 3	C	105	106	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	66	first strand
Strand 2	C	35	39	parallel
Strand 3	C	88	92	parallel
Strand 4	C	252	262	anti-parallel
Strand 5	C	105	106	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	319	321	first strand
Strand 2	D	252	261	parallel
Strand 3	D	88	92	anti-parallel
Strand 4	D	35	39	parallel
Strand 5	D	62	66	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	319	321	first strand
Strand 2	D	252	261	parallel
Strand 3	D	129	140	anti-parallel
Strand 4	D	243	246	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	293	294	first strand
Strand 2	D	129	140	anti-parallel
Strand 3	D	223	227	anti-parallel
Strand 4	D	161	162	parallel
Strand 5	D	206	207	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	243	246	first strand
Strand 2	D	129	140	anti-parallel
Strand 3	D	293	294	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	319	320	first strand
Strand 2	E	252	261	parallel
Strand 3	E	88	92	anti-parallel
Strand 4	E	35	39	parallel
Strand 5	E	62	66	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	319	320	first strand
Strand 2	E	252	261	parallel
Strand 3	E	129	140	anti-parallel
Strand 4	E	243	246	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	293	294	first strand
Strand 2	E	129	140	anti-parallel
Strand 3	E	223	227	anti-parallel
Strand 4	E	161	162	parallel
Strand 5	E	206	207	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	243	246	first strand
Strand 2	E	129	140	anti-parallel
Strand 3	E	293	294	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	206	207	first strand
Strand 2	F	161	162	parallel
Strand 3	F	223	227	parallel
Strand 4	F	128	140	anti-parallel
Strand 5	F	293	294	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	293	294	first strand
Strand 2	F	128	140	anti-parallel
Strand 3	F	243	246	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	243	246	first strand
Strand 2	F	128	140	anti-parallel
Strand 3	F	252	262	anti-parallel
Strand 4	F	319	320	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	319	320	first strand
Strand 2	F	252	262	parallel
Strand 3	F	105	106	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	62	66	first strand
Strand 2	F	35	39	parallel
Strand 3	F	88	92	parallel
Strand 4	F	252	262	anti-parallel
Strand 5	F	105	106	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	319	320	first strand
Strand 2	G	252	261	parallel
Strand 3	G	88	92	anti-parallel
Strand 4	G	35	39	parallel
Strand 5	G	62	66	parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	319	320	first strand
Strand 2	G	252	261	parallel
Strand 3	G	129	140	anti-parallel
Strand 4	G	243	246	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	293	294	first strand
Strand 2	G	129	140	anti-parallel
Strand 3	G	223	227	anti-parallel
Strand 4	G	161	162	parallel
Strand 5	G	206	207	parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	243	246	first strand
Strand 2	G	129	140	anti-parallel
Strand 3	G	293	294	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	319	320	first strand
Strand 2	H	252	261	parallel
Strand 3	H	88	92	anti-parallel
Strand 4	H	35	39	parallel
Strand 5	H	62	66	parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	319	320	first strand
Strand 2	H	252	261	parallel
Strand 3	H	128	140	anti-parallel
Strand 4	H	243	246	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	293	294	first strand
Strand 2	H	128	140	anti-parallel
Strand 3	H	223	227	anti-parallel
Strand 4	H	161	162	parallel
Strand 5	H	206	207	parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	243	246	first strand
Strand 2	H	128	140	anti-parallel
Strand 3	H	293	294	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5T1P

Analysis of interatomic Contacts of Structural Units in PDB entry:
5T1P