Analysis of interatomic Contacts of Structural Units in PDB entry:
5T1Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5T1Q entry

There are 4 chains in PDB entry 5T1Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 262	LYS 619
B	THR 261	LYS 619
C	THR 261	LYS 619
D	LYS 262	SER 446

There are 61 helices in PDB entry 5T1Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	268	274	Right-handed alpha
Helix 2	AA2	A	287	291	Right-handed 310
Helix 3	AA3	A	317	339	Right-handed alpha
Helix 4	AA4	A	341	354	Right-handed alpha
Helix 5	AA5	A	404	419	Right-handed alpha
Helix 6	AA6	A	427	431	Right-handed 310
Helix 7	AA7	A	437	446	Right-handed alpha
Helix 8	AA8	A	454	466	Right-handed alpha
Helix 9	AA9	A	467	472	Right-handed 310
Helix 10	AB1	A	478	480	Right-handed 310
Helix 11	AB2	A	481	486	Right-handed alpha
Helix 12	AB3	A	512	523	Right-handed alpha
Helix 13	AB4	A	534	536	Right-handed 310
Helix 14	AB5	A	537	545	Right-handed alpha
Helix 15	AB6	A	564	568	Right-handed 310
Helix 16	AB7	A	606	611	Right-handed alpha
Helix 17	AB8	B	268	274	Right-handed alpha
Helix 18	AB9	B	287	291	Right-handed 310
Helix 19	AC1	B	317	338	Right-handed alpha
Helix 20	AC2	B	341	354	Right-handed alpha
Helix 21	AC3	B	404	419	Right-handed alpha
Helix 22	AC4	B	427	431	Right-handed 310
Helix 23	AC5	B	437	449	Right-handed alpha
Helix 24	AC6	B	454	466	Right-handed alpha
Helix 25	AC7	B	467	472	Right-handed 310
Helix 26	AC8	B	478	480	Right-handed 310
Helix 27	AC9	B	481	486	Right-handed alpha
Helix 28	AD1	B	512	524	Right-handed alpha
Helix 29	AD2	B	534	536	Right-handed 310
Helix 30	AD3	B	537	545	Right-handed alpha
Helix 31	AD4	B	564	568	Right-handed 310
Helix 32	AD5	B	606	611	Right-handed alpha
Helix 33	AD6	C	268	274	Right-handed alpha
Helix 34	AD7	C	287	291	Right-handed 310
Helix 35	AD8	C	317	338	Right-handed alpha
Helix 36	AD9	C	341	354	Right-handed alpha
Helix 37	AE1	C	404	419	Right-handed alpha
Helix 38	AE2	C	427	431	Right-handed 310
Helix 39	AE3	C	437	449	Right-handed alpha
Helix 40	AE4	C	454	466	Right-handed alpha
Helix 41	AE5	C	467	472	Right-handed 310
Helix 42	AE6	C	479	485	Right-handed alpha
Helix 43	AE7	C	512	523	Right-handed alpha
Helix 44	AE8	C	534	536	Right-handed 310
Helix 45	AE9	C	537	545	Right-handed alpha
Helix 46	AF1	C	564	568	Right-handed 310
Helix 47	AF2	C	606	611	Right-handed alpha
Helix 48	AF3	D	268	274	Right-handed alpha
Helix 49	AF4	D	317	339	Right-handed alpha
Helix 50	AF5	D	341	354	Right-handed alpha
Helix 51	AF6	D	404	419	Right-handed alpha
Helix 52	AF7	D	427	431	Right-handed 310
Helix 53	AF8	D	437	449	Right-handed alpha
Helix 54	AF9	D	454	466	Right-handed alpha
Helix 55	AG1	D	467	472	Right-handed 310
Helix 56	AG2	D	478	486	Right-handed 310
Helix 57	AG3	D	512	523	Right-handed alpha
Helix 58	AG4	D	534	536	Right-handed 310
Helix 59	AG5	D	537	545	Right-handed alpha
Helix 60	AG6	D	564	568	Right-handed 310
Helix 61	AG7	D	606	611	Right-handed alpha

There are 8 sheets in PDB entry 5T1Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	314	first strand
Strand 2	A	297	299	anti-parallel
Strand 3	A	599	605	parallel
Strand 4	A	587	592	anti-parallel
Strand 5	A	574	581	anti-parallel
Strand 6	A	558	561	anti-parallel
Strand 7	A	614	617	anti-parallel
Strand 8	A	548	550	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	379	388	first strand
Strand 2	A	391	400	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	312	314	first strand
Strand 2	B	297	299	anti-parallel
Strand 3	B	599	605	parallel
Strand 4	B	587	592	anti-parallel
Strand 5	B	574	581	anti-parallel
Strand 6	B	558	561	anti-parallel
Strand 7	B	614	617	anti-parallel
Strand 8	B	548	550	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	379	388	first strand
Strand 2	B	391	400	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	312	314	first strand
Strand 2	C	297	299	anti-parallel
Strand 3	C	599	605	parallel
Strand 4	C	587	592	anti-parallel
Strand 5	C	574	581	anti-parallel
Strand 6	C	558	561	anti-parallel
Strand 7	C	614	617	anti-parallel
Strand 8	C	548	550	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	379	388	first strand
Strand 2	C	391	400	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	312	314	first strand
Strand 2	D	297	299	anti-parallel
Strand 3	D	599	605	parallel
Strand 4	D	587	592	anti-parallel
Strand 5	D	574	581	anti-parallel
Strand 6	D	558	561	anti-parallel
Strand 7	D	614	617	anti-parallel
Strand 8	D	548	550	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	379	388	first strand
Strand 2	D	391	400	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5T1Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
5T1Q