Analysis of interatomic Contacts of Structural Units in PDB entry:
5T2F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5T2F entry

There are 3 chains in PDB entry 5T2F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 103	LEU 363
B	HIS 103	GLN 365
C	HIS 103	LYS 295

There are 31 helices in PDB entry 5T2F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	105	123	Right-handed alpha
Helix 2	AA2	A	142	158	Right-handed alpha
Helix 3	AA3	A	178	185	Right-handed 310
Helix 4	AA4	A	189	197	Right-handed alpha
Helix 5	AA5	A	204	213	Right-handed alpha
Helix 6	AA6	A	259	266	Right-handed alpha
Helix 7	AA7	A	356	361	Right-handed alpha
Helix 8	AA8	B	105	124	Right-handed alpha
Helix 9	AA9	B	137	158	Right-handed alpha
Helix 10	AB1	B	181	185	Right-handed 310
Helix 11	AB2	B	189	197	Right-handed alpha
Helix 12	AB3	B	203	214	Right-handed alpha
Helix 13	AB4	B	259	266	Right-handed alpha
Helix 14	AB5	B	303	305	Right-handed 310
Helix 15	AB6	B	356	364	Right-handed alpha
Helix 16	AB7	C	105	123	Right-handed alpha
Helix 17	AB8	C	137	158	Right-handed alpha
Helix 18	AB9	C	181	185	Right-handed 310
Helix 19	AC1	C	189	197	Right-handed alpha
Helix 20	AC2	C	204	214	Right-handed alpha
Helix 21	AC3	C	259	266	Right-handed alpha
Helix 22	AC4	C	356	365	Right-handed alpha
Helix 23	AC5	D	105	123	Right-handed alpha
Helix 24	AC6	D	140	158	Right-handed alpha
Helix 25	AC7	D	178	182	Right-handed 310
Helix 26	AC8	D	189	197	Right-handed alpha
Helix 27	AC9	D	204	213	Right-handed alpha
Helix 28	AD1	D	259	266	Right-handed alpha
Helix 29	AD2	D	303	305	Right-handed 310
Helix 30	AD3	D	344	348	Right-handed 310
Helix 31	AD4	D	356	365	Right-handed alpha

There are 12 sheets in PDB entry 5T2F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	163	first strand
Strand 2	A	125	128	parallel
Strand 3	A	172	175	parallel
Strand 4	A	200	203	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	254	258	first strand
Strand 2	A	239	246	anti-parallel
Strand 3	A	349	355	anti-parallel
Strand 4	A	338	340	anti-parallel
Strand 5	A	318	319	anti-parallel
Strand 6	A	322	323	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	285	first strand
Strand 2	A	270	277	parallel
Strand 3	A	297	302	anti-parallel
Strand 4	A	307	311	anti-parallel
Strand 5	A	330	331	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	163	first strand
Strand 2	B	125	128	parallel
Strand 3	B	172	174	parallel
Strand 4	B	200	202	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	254	258	first strand
Strand 2	B	239	246	anti-parallel
Strand 3	B	349	355	anti-parallel
Strand 4	B	338	340	anti-parallel
Strand 5	B	318	319	anti-parallel
Strand 6	B	322	323	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	285	first strand
Strand 2	B	272	277	parallel
Strand 3	B	297	301	anti-parallel
Strand 4	B	307	311	anti-parallel
Strand 5	B	330	331	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	163	first strand
Strand 2	C	125	128	parallel
Strand 3	C	172	175	parallel
Strand 4	C	200	203	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	254	258	first strand
Strand 2	C	239	246	anti-parallel
Strand 3	C	349	355	anti-parallel
Strand 4	C	338	340	anti-parallel
Strand 5	C	318	319	anti-parallel
Strand 6	C	322	323	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	284	285	first strand
Strand 2	C	270	277	parallel
Strand 3	C	297	302	anti-parallel
Strand 4	C	306	311	anti-parallel
Strand 5	C	329	331	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	161	162	first strand
Strand 2	D	125	128	parallel
Strand 3	D	172	175	parallel
Strand 4	D	200	203	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	254	258	first strand
Strand 2	D	239	246	anti-parallel
Strand 3	D	349	355	anti-parallel
Strand 4	D	337	340	anti-parallel
Strand 5	D	317	319	anti-parallel
Strand 6	D	322	323	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	284	285	first strand
Strand 2	D	272	277	parallel
Strand 3	D	297	301	anti-parallel
Strand 4	D	307	311	anti-parallel
Strand 5	D	330	331	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5T2F

Analysis of interatomic Contacts of Structural Units in PDB entry:
5T2F