Analysis of interatomic Contacts of Structural Units in PDB entry:
5T2S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5T2S entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 5T2S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 103LYS 362
B
 ASP 1SER 4
B
 ASP 6ASP 9
C
 HIS 103GLN 360
D
 ASP 1SER 4
D
 ASP 6ASP 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5T2S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
105 123Right-handed alpha
Helix 2
AA2
A
137 158Right-handed alpha
Helix 3
AA3
A
181 185Right-handed 310
Helix 4
AA4
A
189 197Right-handed alpha
Helix 5
AA5
A
203 214Right-handed alpha
Helix 6
AA6
A
254 261Right-handed alpha
Helix 7
AA7
A
351 361Right-handed alpha
Helix 8
AA8
C
105 123Right-handed alpha
Helix 9
AA9
C
137 158Right-handed alpha
Helix 10
AB1
C
181 185Right-handed 310
Helix 11
AB2
C
189 197Right-handed alpha
Helix 12
AB3
C
204 214Right-handed alpha
Helix 13
AB4
C
254 261Right-handed alpha
Helix 14
AB5
C
351 358Right-handed alpha
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There are 6 sheets in PDB entry 5T2S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 162first strand
Strand 2
A
125 128parallel
Strand 3
A
172 174parallel
Strand 4
A
200 202parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 253first strand
Strand 2
A
234 241anti-parallel
Strand 3
A
344 350anti-parallel
Strand 4
A
331 335anti-parallel
Strand 5
A
313 314anti-parallel
Strand 6
A
317 318anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 280first strand
Strand 2
A
267 272parallel
Strand 3
A
292 296anti-parallel
Strand 4
A
302 306anti-parallel
Strand 5
A
325 326anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
161 163first strand
Strand 2
C
125 128parallel
Strand 3
C
172 175parallel
Strand 4
C
200 203parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
249 253first strand
Strand 2
C
234 241anti-parallel
Strand 3
C
344 350anti-parallel
Strand 4
C
333 335anti-parallel
Strand 5
C
312 314anti-parallel
Strand 6
C
317 318anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
279 280first strand
Strand 2
C
265 272parallel
Strand 3
C
292 297anti-parallel
Strand 4
C
302 306anti-parallel
Strand 5
C
325 326anti-parallel
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