Analysis of interatomic Contacts of Structural Units in PDB entry:
5T38


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5T38 entry

There is 1 chain in PDB entry 5T38 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG -4ARG 233
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5T38. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 13Right-handed alpha
Helix 2
AA2
A
33 37Right-handed 310
Helix 3
AA3
A
40 52Right-handed alpha
Helix 4
AA4
A
66 74Right-handed alpha
Helix 5
AA5
A
86 101Right-handed alpha
Helix 6
AA6
A
116 120Right-handed 310
Helix 7
AA7
A
131 135Right-handed 310
Helix 8
AA8
A
137 149Right-handed alpha
Helix 9
AA9
A
182 186Right-handed 310
Helix 10
AB1
A
196 208Right-handed alpha
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There are 3 sheets in PDB entry 5T38. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 22first strand
Strand 2
A
25 28anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 109first strand
Strand 2
A
79 84parallel
Strand 3
A
57 61parallel
Strand 4
A
125 129parallel
Strand 5
A
151 159parallel
Strand 6
A
223 231anti-parallel
Strand 7
A
211 218anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 168first strand
Strand 2
A
171 177anti-parallel
Strand 3
A
191 195anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il