Analysis of interatomic Contacts of Structural Units in PDB entry:
5T3B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5T3B entry

There are 2 chains in PDB entry 5T3B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 2LYS 459
B
 PRO 3LYS 459
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 5T3B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
40 44Right-handed 310
Helix 2
AA2
A
53 61Right-handed alpha
Helix 3
AA3
A
112 120Right-handed alpha
Helix 4
AA4
A
122 137Right-handed alpha
Helix 5
AA5
A
146 161Right-handed alpha
Helix 6
AA6
A
172 182Right-handed alpha
Helix 7
AA7
A
185 199Right-handed 310
Helix 8
AA8
A
201 211Right-handed alpha
Helix 9
AA9
A
212 216Right-handed 310
Helix 10
AB1
A
241 248Right-handed alpha
Helix 11
AB2
A
254 267Right-handed alpha
Helix 12
AB3
A
272 276Right-handed 310
Helix 13
AB4
A
277 303Right-handed alpha
Helix 14
AB5
A
318 321Right-handed 310
Helix 15
AB6
A
322 333Right-handed alpha
Helix 16
AB7
A
347 358Right-handed alpha
Helix 17
AB8
A
374 376Right-handed 310
Helix 18
AB9
A
389 406Right-handed alpha
Helix 19
AC1
A
436 448Right-handed alpha
Helix 20
AC2
A
449 459Right-handed alpha
Helix 21
AC3
B
40 44Right-handed 310
Helix 22
AC4
B
53 61Right-handed alpha
Helix 23
AC5
B
112 120Right-handed alpha
Helix 24
AC6
B
122 137Right-handed alpha
Helix 25
AC7
B
146 161Right-handed alpha
Helix 26
AC8
B
172 182Right-handed alpha
Helix 27
AC9
B
185 199Right-handed 310
Helix 28
AD1
B
201 211Right-handed alpha
Helix 29
AD2
B
212 216Right-handed 310
Helix 30
AD3
B
241 248Right-handed alpha
Helix 31
AD4
B
254 267Right-handed alpha
Helix 32
AD5
B
272 276Right-handed 310
Helix 33
AD6
B
277 303Right-handed alpha
Helix 34
AD7
B
318 321Right-handed 310
Helix 35
AD8
B
322 333Right-handed alpha
Helix 36
AD9
B
347 358Right-handed alpha
Helix 37
AE1
B
374 376Right-handed 310
Helix 38
AE2
B
389 406Right-handed alpha
Helix 39
AE3
B
436 448Right-handed alpha
Helix 40
AE4
B
449 459Right-handed alpha
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There are 8 sheets in PDB entry 5T3B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 10first strand
Strand 2
A
17 18anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 38first strand
Strand 2
A
21 26anti-parallel
Strand 3
A
385 387anti-parallel
Strand 4
A
370 372parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 83first strand
Strand 2
A
89 92anti-parallel
Strand 3
A
98 99anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 168first strand
Strand 2
A
141 143parallel
Strand 3
A
101 104parallel
Strand 4
A
410 415parallel
Strand 5
A
363 367parallel
Strand 6
A
336 339parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 10first strand
Strand 2
B
17 18anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 38first strand
Strand 2
B
21 26anti-parallel
Strand 3
B
385 387anti-parallel
Strand 4
B
370 372parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 82first strand
Strand 2
B
90 92anti-parallel
Strand 3
B
98 99anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 168first strand
Strand 2
B
141 143parallel
Strand 3
B
101 104parallel
Strand 4
B
410 415parallel
Strand 5
B
363 367parallel
Strand 6
B
336 339parallel
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