Analysis of interatomic Contacts of Structural Units in PDB entry:
5T3D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5T3D entry

There is 1 chain in PDB entry 5T3D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 4	GLU 1045

There are 39 helices in PDB entry 5T3D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	21	Right-handed alpha
Helix 2	AA2	A	40	55	Right-handed alpha
Helix 3	AA3	A	56	58	Right-handed 310
Helix 4	AA4	A	94	105	Right-handed alpha
Helix 5	AA5	A	110	114	Right-handed 310
Helix 6	AA6	A	145	162	Right-handed alpha
Helix 7	AA7	A	173	186	Right-handed alpha
Helix 8	AA8	A	187	204	Right-handed alpha
Helix 9	AA9	A	234	244	Right-handed alpha
Helix 10	AB1	A	248	265	Right-handed alpha
Helix 11	AB2	A	281	286	Right-handed 310
Helix 12	AB3	A	305	323	Right-handed alpha
Helix 13	AB4	A	327	335	Right-handed alpha
Helix 14	AB5	A	402	423	Right-handed alpha
Helix 15	AB6	A	427	431	Right-handed 310
Helix 16	AB7	A	437	446	Right-handed alpha
Helix 17	AB8	A	456	468	Right-handed alpha
Helix 18	AB9	A	483	500	Right-handed alpha
Helix 19	AC1	A	515	528	Right-handed alpha
Helix 20	AC2	A	540	552	Right-handed alpha
Helix 21	AC3	A	564	569	Right-handed 310
Helix 22	AC4	A	617	631	Right-handed alpha
Helix 23	AC5	A	649	661	Right-handed alpha
Helix 24	AC6	A	670	673	Right-handed 310
Helix 25	AC7	A	674	685	Right-handed alpha
Helix 26	AC8	A	693	703	Right-handed alpha
Helix 27	AC9	A	705	713	Right-handed alpha
Helix 28	AD1	A	727	739	Right-handed alpha
Helix 29	AD2	A	761	767	Right-handed alpha
Helix 30	AD3	A	816	823	Right-handed alpha
Helix 31	AD4	A	869	878	Right-handed alpha
Helix 32	AD5	A	893	897	Right-handed 310
Helix 33	AD6	A	918	930	Right-handed alpha
Helix 34	AD7	A	931	935	Right-handed 310
Helix 35	AD8	A	954	958	Right-handed 310
Helix 36	AD9	A	975	989	Right-handed alpha
Helix 37	AE1	A	1005	1020	Right-handed alpha
Helix 38	AE2	A	1025	1032	Right-handed alpha
Helix 39	AE3	A	1034	1044	Right-handed alpha

There are 11 sheets in PDB entry 5T3D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	6	first strand
Strand 2	A	68	73	anti-parallel
Strand 3	A	60	65	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	85	first strand
Strand 2	A	118	123	parallel
Strand 3	A	130	137	anti-parallel
Strand 4	A	28	35	anti-parallel
Strand 5	A	367	371	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	231	first strand
Strand 2	A	390	397	anti-parallel
Strand 3	A	378	384	anti-parallel
Strand 4	A	347	350	parallel
Strand 5	A	268	275	parallel
Strand 6	A	292	299	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	480	482	first strand
Strand 2	A	472	475	anti-parallel
Strand 3	A	663	666	parallel
Strand 4	A	638	641	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	531	534	first strand
Strand 2	A	507	510	parallel
Strand 3	A	555	558	parallel
Strand 4	A	574	576	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	597	603	first strand
Strand 2	A	611	616	anti-parallel
Strand 3	A	812	813	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	689	692	first strand
Strand 2	A	718	722	parallel
Strand 3	A	742	746	parallel
Strand 4	A	756	759	anti-parallel
Strand 5	A	777	778	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	782	787	first strand
Strand 2	A	800	806	anti-parallel
Strand 3	A	834	844	anti-parallel
Strand 4	A	824	826	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	782	787	first strand
Strand 2	A	800	806	anti-parallel
Strand 3	A	834	844	anti-parallel
Strand 4	A	850	855	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	859	862	first strand
Strand 2	A	865	868	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	882	890	first strand
Strand 2	A	904	911	anti-parallel
Strand 3	A	938	941	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5T3D

Analysis of interatomic Contacts of Structural Units in PDB entry:
5T3D