Analysis of interatomic Contacts of Structural Units in PDB entry:
5T3E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5T3E entry

There are 2 chains in PDB entry 5T3E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 847SER 1278
B
 ASP 845PRO 1274
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5T3E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
853 862Right-handed alpha
Helix 2
AA2
A
885 900Right-handed alpha
Helix 3
AA3
A
901 903Right-handed 310
Helix 4
AA4
A
933 951Right-handed alpha
Helix 5
AA5
A
985 1002Right-handed alpha
Helix 6
AA6
A
1013 1025Right-handed alpha
Helix 7
AA7
A
1027 1041Right-handed alpha
Helix 8
AA8
A
1055 1059Right-handed 310
Helix 9
AA9
A
1072 1086Right-handed alpha
Helix 10
AB1
A
1089 1107Right-handed alpha
Helix 11
AB2
A
1126 1130Right-handed 310
Helix 12
AB3
A
1149 1166Right-handed alpha
Helix 13
AB4
A
1171 1183Right-handed alpha
Helix 14
AB5
A
1205 1209Right-handed 310
Helix 15
AB6
A
1245 1247Right-handed 310
Helix 16
AB7
A
1248 1270Right-handed alpha
Helix 17
AB8
B
853 862Right-handed alpha
Helix 18
AB9
B
885 900Right-handed alpha
Helix 19
AC1
B
901 903Right-handed 310
Helix 20
AC2
B
933 951Right-handed alpha
Helix 21
AC3
B
985 1002Right-handed alpha
Helix 22
AC4
B
1013 1025Right-handed alpha
Helix 23
AC5
B
1027 1040Right-handed alpha
Helix 24
AC6
B
1055 1059Right-handed 310
Helix 25
AC7
B
1072 1086Right-handed alpha
Helix 26
AC8
B
1089 1107Right-handed alpha
Helix 27
AC9
B
1126 1130Right-handed 310
Helix 28
AD1
B
1149 1166Right-handed alpha
Helix 29
AD2
B
1171 1184Right-handed alpha
Helix 30
AD3
B
1205 1209Right-handed 310
Helix 31
AD4
B
1245 1247Right-handed 310
Helix 32
AD5
B
1248 1270Right-handed alpha
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There are 6 sheets in PDB entry 5T3E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
850 851first strand
Strand 2
A
912 915anti-parallel
Strand 3
A
905 908anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
925 928first strand
Strand 2
A
961 969parallel
Strand 3
A
972 980anti-parallel
Strand 4
A
875 882anti-parallel
Strand 5
A
1211 1219anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1064 1071first strand
Strand 2
A
1235 1243anti-parallel
Strand 3
A
1225 1232anti-parallel
Strand 4
A
1193 1198parallel
Strand 5
A
1110 1117parallel
Strand 6
A
1136 1143anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
850 851first strand
Strand 2
B
912 915anti-parallel
Strand 3
B
905 908anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
925 928first strand
Strand 2
B
961 969parallel
Strand 3
B
972 980anti-parallel
Strand 4
B
875 882anti-parallel
Strand 5
B
1211 1219anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1064 1071first strand
Strand 2
B
1235 1243anti-parallel
Strand 3
B
1225 1232anti-parallel
Strand 4
B
1193 1198parallel
Strand 5
B
1110 1117parallel
Strand 6
B
1136 1143anti-parallel
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