Analysis of interatomic Contacts of Structural Units in PDB entry:
5T3O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5T3O entry

There are 3 chains in PDB entry 5T3O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 4THR 310
B
 PRO 4THR 310
C
 PRO 4THR 310
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 5T3O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 23Right-handed alpha
Helix 2
AA2
A
63 81Right-handed alpha
Helix 3
AA3
A
93 98Right-handed 310
Helix 4
AA4
A
108 121Right-handed alpha
Helix 5
AA5
A
132 139Right-handed 310
Helix 6
AA6
A
148 160Right-handed alpha
Helix 7
AA7
A
174 179Right-handed alpha
Helix 8
AA8
A
180 185Right-handed alpha
Helix 9
AA9
A
226 237Right-handed alpha
Helix 10
AB1
A
256 264Right-handed alpha
Helix 11
AB2
A
288 302Right-handed alpha
Helix 12
AB3
A
305 309Right-handed 310
Helix 13
AB4
B
13 24Right-handed alpha
Helix 14
AB5
B
63 81Right-handed alpha
Helix 15
AB6
B
93 98Right-handed 310
Helix 16
AB7
B
108 121Right-handed alpha
Helix 17
AB8
B
134 139Right-handed 310
Helix 18
AB9
B
148 160Right-handed alpha
Helix 19
AC1
B
171 173Right-handed 310
Helix 20
AC2
B
174 186Right-handed alpha
Helix 21
AC3
B
226 238Right-handed alpha
Helix 22
AC4
B
256 264Right-handed alpha
Helix 23
AC5
B
288 302Right-handed alpha
Helix 24
AC6
B
305 310Right-handed 310
Helix 25
AC7
C
13 24Right-handed alpha
Helix 26
AC8
C
63 81Right-handed alpha
Helix 27
AC9
C
93 98Right-handed 310
Helix 28
AD1
C
108 121Right-handed alpha
Helix 29
AD2
C
132 139Right-handed 310
Helix 30
AD3
C
148 160Right-handed alpha
Helix 31
AD4
C
174 186Right-handed alpha
Helix 32
AD5
C
226 239Right-handed alpha
Helix 33
AD6
C
256 264Right-handed alpha
Helix 34
AD7
C
288 302Right-handed alpha
Helix 35
AD8
C
305 309Right-handed 310
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There are 9 sheets in PDB entry 5T3O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 9first strand
Strand 2
A
53 57parallel
Strand 3
A
85 90parallel
Strand 4
A
124 128parallel
Strand 5
A
143 146parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 35first strand
Strand 2
A
41 45anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 208first strand
Strand 2
A
189 192anti-parallel
Strand 3
A
165 169parallel
Strand 4
A
215 223parallel
Strand 5
A
244 251parallel
Strand 6
A
269 272parallel
Strand 7
A
283 286parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 9first strand
Strand 2
B
53 57parallel
Strand 3
B
85 90parallel
Strand 4
B
124 128parallel
Strand 5
B
143 146parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 35first strand
Strand 2
B
41 45anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
202 208first strand
Strand 2
B
189 196anti-parallel
Strand 3
B
165 169parallel
Strand 4
B
215 223parallel
Strand 5
B
243 251parallel
Strand 6
B
268 272parallel
Strand 7
B
283 286parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 9first strand
Strand 2
C
53 57parallel
Strand 3
C
85 90parallel
Strand 4
C
124 128parallel
Strand 5
C
143 146parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
31 35first strand
Strand 2
C
41 45anti-parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
207 208first strand
Strand 2
C
189 192anti-parallel
Strand 3
C
165 169parallel
Strand 4
C
215 223parallel
Strand 5
C
243 251parallel
Strand 6
C
268 272parallel
Strand 7
C
283 286parallel
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