Analysis of interatomic Contacts of Structural Units in PDB entry:
5T3P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5T3P entry

There are 3 chains in PDB entry 5T3P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 14HIS 232
B
 ASN 14LYS 233
C
 ASN 14LYS 234
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5T3P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 25Right-handed alpha
Helix 2
AA2
A
26 28Right-handed 310
Helix 3
AA3
A
85 99Right-handed alpha
Helix 4
AA4
A
101 103Right-handed 310
Helix 5
AA5
A
151 154Right-handed 310
Helix 6
AA6
A
191 206Right-handed alpha
Helix 7
AA7
A
219 230Right-handed alpha
Helix 8
AA8
B
15 26Right-handed alpha
Helix 9
AA9
B
27 28Right-handed 310
Helix 10
AB1
B
29 34Right-handed 310
Helix 11
AB2
B
85 99Right-handed alpha
Helix 12
AB3
B
101 103Right-handed 310
Helix 13
AB4
B
151 154Right-handed 310
Helix 14
AB5
B
191 206Right-handed alpha
Helix 15
AB6
B
219 233Right-handed alpha
Helix 16
AB7
C
15 26Right-handed alpha
Helix 17
AB8
C
85 99Right-handed alpha
Helix 18
AB9
C
101 103Right-handed 310
Helix 19
AC1
C
151 154Right-handed 310
Helix 20
AC2
C
191 206Right-handed alpha
Helix 21
AC3
C
219 234Right-handed alpha
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There are 11 sheets in PDB entry 5T3P. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 78first strand
Strand 2
A
39 47anti-parallel
Strand 3
A
120 129parallel
Strand 4
A
105 110anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 50first strand
Strand 2
A
53 61anti-parallel
Strand 3
A
142 149anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 165first strand
Strand 2
A
170 179anti-parallel
Strand 3
A
186 190anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 78first strand
Strand 2
B
39 47anti-parallel
Strand 3
B
120 129parallel
Strand 4
B
105 110anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 50first strand
Strand 2
B
53 61anti-parallel
Strand 3
B
142 149anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 166first strand
Strand 2
B
169 179anti-parallel
Strand 3
B
186 190anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 117first strand
Strand 2
B
120 122anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
76 78first strand
Strand 2
C
39 47anti-parallel
Strand 3
C
120 129parallel
Strand 4
C
105 110anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
46 50first strand
Strand 2
C
53 61anti-parallel
Strand 3
C
142 149anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
159 166first strand
Strand 2
C
169 179anti-parallel
Strand 3
C
186 190anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
114 117first strand
Strand 2
C
120 122anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il