Analysis of interatomic Contacts of Structural Units in PDB entry:
5T49


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5T49 entry

There is 1 chain in PDB entry 5T49 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 28ASP 779
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5T49. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
51 57Right-handed alpha
Helix 2
AA2
A
82 87Right-handed alpha
Helix 3
AA3
A
113 117Right-handed 310
Helix 4
AA4
A
254 265Right-handed alpha
Helix 5
AA5
A
309 314Right-handed alpha
Helix 6
AA6
A
315 316Right-handed 310
Helix 7
AA7
A
317 322Right-handed 310
Helix 8
AA8
A
365 376Right-handed alpha
Helix 9
AA9
A
377 379Right-handed 310
Helix 10
AB1
A
385 406Right-handed alpha
Helix 11
AB2
A
408 427Right-handed alpha
Helix 12
AB3
A
466 485Right-handed alpha
Helix 13
AB4
A
485 490Right-handed alpha
Helix 14
AB5
A
494 507Right-handed alpha
Helix 15
AB6
A
543 561Right-handed alpha
Helix 16
AB7
A
563 585Right-handed alpha
Helix 17
AB8
A
621 626Right-handed alpha
Helix 18
AB9
A
634 640Right-handed 310
Helix 19
AC1
A
641 657Right-handed alpha
Helix 20
AC2
A
664 673Right-handed alpha
Helix 21
AC3
A
676 688Right-handed alpha
Helix 22
AC4
A
689 691Right-handed 310
Helix 23
AC5
A
707 722Right-handed alpha
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There are 9 sheets in PDB entry 5T49. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 32first strand
Strand 2
A
35 38anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 102first strand
Strand 2
A
107 110anti-parallel
Strand 3
A
138 142anti-parallel
Strand 4
A
192 195anti-parallel
Strand 5
A
237 240anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 122first strand
Strand 2
A
127 131anti-parallel
Strand 3
A
609 612anti-parallel
Strand 4
A
604 606anti-parallel
Strand 5
A
540 541anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 156first strand
Strand 2
A
160 167anti-parallel
Strand 3
A
170 177anti-parallel
Strand 4
A
182 188anti-parallel
Strand 5
A
244 249anti-parallel
Strand 6
A
219 223anti-parallel
Strand 7
A
209 213anti-parallel
Strand 8
A
201 205anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 279first strand
Strand 2
A
284 295anti-parallel
Strand 3
A
344 350anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 308first strand
Strand 2
A
335 342anti-parallel
Strand 3
A
324 332anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
441 445first strand
Strand 2
A
450 454anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
723 724first strand
Strand 2
A
735 740anti-parallel
Strand 3
A
743 750anti-parallel
Strand 4
A
772 773anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
756 759first strand
Strand 2
A
765 768anti-parallel
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