Analysis of interatomic Contacts of Structural Units in PDB entry:
5T4C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5T4C entry

There is 1 chain in PDB entry 5T4C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 27GLY 778
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5T4C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
51 58Right-handed alpha
Helix 2
AA2
A
82 87Right-handed alpha
Helix 3
AA3
A
113 117Right-handed 310
Helix 4
AA4
A
254 265Right-handed alpha
Helix 5
AA5
A
309 314Right-handed alpha
Helix 6
AA6
A
315 316Right-handed 310
Helix 7
AA7
A
317 324Right-handed 310
Helix 8
AA8
A
365 376Right-handed alpha
Helix 9
AA9
A
377 379Right-handed 310
Helix 10
AB1
A
385 406Right-handed alpha
Helix 11
AB2
A
408 427Right-handed alpha
Helix 12
AB3
A
466 485Right-handed alpha
Helix 13
AB4
A
494 507Right-handed alpha
Helix 14
AB5
A
543 561Right-handed alpha
Helix 15
AB6
A
563 585Right-handed alpha
Helix 16
AB7
A
621 626Right-handed alpha
Helix 17
AB8
A
634 640Right-handed 310
Helix 18
AB9
A
641 657Right-handed alpha
Helix 19
AC1
A
664 673Right-handed alpha
Helix 20
AC2
A
676 688Right-handed alpha
Helix 21
AC3
A
707 722Right-handed alpha
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There are 10 sheets in PDB entry 5T4C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 32first strand
Strand 2
A
35 38anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 103first strand
Strand 2
A
106 110anti-parallel
Strand 3
A
138 142anti-parallel
Strand 4
A
192 195anti-parallel
Strand 5
A
237 240anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 122first strand
Strand 2
A
127 131anti-parallel
Strand 3
A
609 612anti-parallel
Strand 4
A
604 606anti-parallel
Strand 5
A
540 541anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 156first strand
Strand 2
A
160 167anti-parallel
Strand 3
A
170 177anti-parallel
Strand 4
A
182 188anti-parallel
Strand 5
A
244 249anti-parallel
Strand 6
A
219 223anti-parallel
Strand 7
A
209 213anti-parallel
Strand 8
A
201 205anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 278first strand
Strand 2
A
284 295anti-parallel
Strand 3
A
344 350anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 305first strand
Strand 2
A
341 342anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 332first strand
Strand 2
A
335 338anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
441 445first strand
Strand 2
A
450 454anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
723 724first strand
Strand 2
A
735 740anti-parallel
Strand 3
A
743 750anti-parallel
Strand 4
A
772 773anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
756 759first strand
Strand 2
A
765 768anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il