Analysis of interatomic Contacts of Structural Units in PDB entry:
5T4J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5T4J entry

There is 1 chain in PDB entry 5T4J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER 107HIS 471
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5T4J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
123 138Right-handed alpha
Helix 2
AA2
B
139 144Right-handed 310
Helix 3
AA3
B
151 166Right-handed alpha
Helix 4
AA4
B
171 173Right-handed 310
Helix 5
AA5
B
180 192Right-handed alpha
Helix 6
AA6
B
205 215Right-handed alpha
Helix 7
AA7
B
230 238Right-handed alpha
Helix 8
AA8
B
257 271Right-handed alpha
Helix 9
AA9
B
294 299Right-handed alpha
Helix 10
AB1
B
315 319Right-handed 310
Helix 11
AB2
B
326 335Right-handed alpha
Helix 12
AB3
B
344 357Right-handed alpha
Helix 13
AB4
B
358 386Right-handed alpha
Helix 14
AB5
B
410 421Right-handed alpha
Helix 15
AB6
B
429 432Right-handed 310
Helix 16
AB7
B
453 455Right-handed 310
Helix 17
AB8
B
456 470Right-handed alpha
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There are 3 sheets in PDB entry 5T4J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
110 111first strand
Strand 2
B
423 424parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 178first strand
Strand 2
B
321 324anti-parallel
Strand 3
B
304 309anti-parallel
Strand 4
B
275 279parallel
Strand 5
B
241 244parallel
Strand 6
B
197 202parallel
Strand 7
B
218 225parallel
Strand 8
B
228 229anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
390 393first strand
Strand 2
B
400 405anti-parallel
Strand 3
B
444 448anti-parallel
Strand 4
B
426 427anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il