Analysis of interatomic Contacts of Structural Units in PDB entry:
5T4P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5T4P entry

There are 22 chains in PDB entry 5T4P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLN 511
B	GLN 2	GLN 511
C	ASN 4	GLN 511
D	HIS -6	LEU 459
E	HIS -6	LEU 459
F	HIS -6	LEU 459
G	ALA 1	ALA 284
H	ALA 1	LYS 136
I	ASN 2	LEU 156
J	ASN 2	LEU 156
K	MET 46	SER 268
L	GLU 2	GLY 161
M	ASN 3	ALA 77
N	ASN 3	ALA 77
O	ASN 3	ALA 77
P	ASN 3	ALA 77
Q	ASN 3	ALA 77
R	ASN 3	ALA 77
S	ASN 3	ALA 77
T	ASN 3	ALA 77
U	ASN 3	ALA 77
V	ASN 3	ALA 77

There are180 helices in PDB entry 5T4P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	10	Right-handed alpha
Helix 2	AA2	A	14	19	Right-handed alpha
Helix 3	AA3	A	100	104	Right-handed 310
Helix 4	AA4	A	150	157	Right-handed alpha
Helix 5	AA5	A	181	186	Right-handed alpha
Helix 6	AA6	A	201	216	Right-handed alpha
Helix 7	AA7	A	233	242	Right-handed alpha
Helix 8	AA8	A	242	251	Right-handed alpha
Helix 9	AA9	A	263	277	Right-handed alpha
Helix 10	AB1	A	282	286	Right-handed 310
Helix 11	AB2	A	288	296	Right-handed alpha
Helix 12	AB3	A	306	313	Right-handed alpha
Helix 13	AB4	A	339	349	Right-handed alpha
Helix 14	AB5	A	377	382	Right-handed 310
Helix 15	AB6	A	392	401	Right-handed alpha
Helix 16	AB7	A	402	407	Right-handed 310
Helix 17	AB8	A	416	422	Right-handed alpha
Helix 18	AB9	A	422	432	Right-handed alpha
Helix 19	AC1	A	440	452	Right-handed alpha
Helix 20	AC2	A	461	480	Right-handed alpha
Helix 21	AC3	A	482	489	Right-handed alpha
Helix 22	AC4	A	493	507	Right-handed alpha
Helix 23	AC5	B	4	16	Right-handed alpha
Helix 24	AC6	B	150	157	Right-handed alpha
Helix 25	AC7	B	176	182	Right-handed alpha
Helix 26	AC8	B	183	190	Right-handed alpha
Helix 27	AC9	B	201	215	Right-handed alpha
Helix 28	AD1	B	231	247	Right-handed alpha
Helix 29	AD2	B	262	277	Right-handed alpha
Helix 30	AD3	B	289	297	Right-handed alpha
Helix 31	AD4	B	332	336	Right-handed 310
Helix 32	AD5	B	339	349	Right-handed alpha
Helix 33	AD6	B	358	363	Right-handed alpha
Helix 34	AD7	B	377	382	Right-handed 310
Helix 35	AD8	B	383	390	Right-handed alpha
Helix 36	AD9	B	392	408	Right-handed alpha
Helix 37	AE1	B	414	421	Right-handed alpha
Helix 38	AE2	B	425	431	Right-handed alpha
Helix 39	AE3	B	442	453	Right-handed alpha
Helix 40	AE4	B	454	457	Right-handed 310
Helix 41	AE5	B	461	479	Right-handed alpha
Helix 42	AE6	B	482	490	Right-handed alpha
Helix 43	AE7	B	493	510	Right-handed alpha
Helix 44	AE8	C	10	19	Right-handed alpha
Helix 45	AE9	C	112	116	Right-handed 310
Helix 46	AF1	C	150	157	Right-handed alpha
Helix 47	AF2	C	179	188	Right-handed alpha
Helix 48	AF3	C	201	215	Right-handed alpha
Helix 49	AF4	C	217	221	Right-handed 310
Helix 50	AF5	C	236	242	Right-handed alpha
Helix 51	AF6	C	243	253	Right-handed 310
Helix 52	AF7	C	263	265	Right-handed 310
Helix 53	AF8	C	266	277	Right-handed alpha
Helix 54	AF9	C	282	286	Right-handed 310
Helix 55	AG1	C	288	297	Right-handed alpha
Helix 56	AG2	C	305	312	Right-handed alpha
Helix 57	AG3	C	340	349	Right-handed alpha
Helix 58	AG4	C	357	362	Right-handed alpha
Helix 59	AG5	C	377	382	Right-handed 310
Helix 60	AG6	C	392	407	Right-handed alpha
Helix 61	AG7	C	416	432	Right-handed alpha
Helix 62	AG8	C	440	453	Right-handed alpha
Helix 63	AG9	C	454	458	Right-handed 310
Helix 64	AH1	C	461	480	Right-handed alpha
Helix 65	AH2	C	482	489	Right-handed alpha
Helix 66	AH3	C	493	509	Right-handed alpha
Helix 67	AH4	D	80	84	Right-handed 310
Helix 68	AH5	D	154	164	Right-handed alpha
Helix 69	AH6	D	182	196	Right-handed alpha
Helix 70	AH7	D	197	202	Right-handed 310
Helix 71	AH8	D	212	218	Right-handed alpha
Helix 72	AH9	D	219	228	Right-handed alpha
Helix 73	AI1	D	243	259	Right-handed alpha
Helix 74	AI2	D	263	267	Right-handed 310
Helix 75	AI3	D	270	282	Right-handed alpha
Helix 76	AI4	D	305	312	Right-handed alpha
Helix 77	AI5	D	322	328	Right-handed alpha
Helix 78	AI6	D	350	372	Right-handed alpha
Helix 79	AI7	D	372	377	Right-handed alpha
Helix 80	AI8	D	383	389	Right-handed alpha
Helix 81	AI9	D	389	394	Right-handed alpha
Helix 82	AJ1	D	394	401	Right-handed alpha
Helix 83	AJ2	D	404	410	Right-handed alpha
Helix 84	AJ3	D	420	425	Right-handed alpha
Helix 85	AJ4	D	425	433	Right-handed alpha
Helix 86	AJ5	D	439	444	Right-handed alpha
Helix 87	AJ6	D	448	453	Right-handed alpha
Helix 88	AJ7	E	81	85	Right-handed 310
Helix 89	AJ8	E	154	170	Right-handed alpha
Helix 90	AJ9	E	182	196	Right-handed alpha
Helix 91	AK1	E	197	201	Right-handed 310
Helix 92	AK2	E	212	217	Right-handed alpha
Helix 93	AK3	E	218	234	Right-handed alpha
Helix 94	AK4	E	244	258	Right-handed alpha
Helix 95	AK5	E	263	267	Right-handed 310
Helix 96	AK6	E	271	282	Right-handed alpha
Helix 97	AK7	E	307	315	Right-handed alpha
Helix 98	AK8	E	322	328	Right-handed alpha
Helix 99	AK9	E	349	378	Right-handed alpha
Helix 100	AL1	E	383	401	Right-handed alpha
Helix 101	AL2	E	406	411	Right-handed alpha
Helix 102	AL3	E	419	432	Right-handed alpha
Helix 103	AL4	E	439	444	Right-handed alpha
Helix 104	AL5	E	448	459	Right-handed alpha
Helix 105	AL6	F	80	84	Right-handed 310
Helix 106	AL7	F	154	164	Right-handed alpha
Helix 107	AL8	F	182	196	Right-handed alpha
Helix 108	AL9	F	197	202	Right-handed 310
Helix 109	AM1	F	212	218	Right-handed alpha
Helix 110	AM2	F	219	228	Right-handed alpha
Helix 111	AM3	F	243	259	Right-handed alpha
Helix 112	AM4	F	263	267	Right-handed 310
Helix 113	AM5	F	270	282	Right-handed alpha
Helix 114	AM6	F	305	312	Right-handed alpha
Helix 115	AM7	F	322	328	Right-handed alpha
Helix 116	AM8	F	350	372	Right-handed alpha
Helix 117	AM9	F	372	377	Right-handed alpha
Helix 118	AN1	F	383	389	Right-handed alpha
Helix 119	AN2	F	389	394	Right-handed alpha
Helix 120	AN3	F	394	401	Right-handed alpha
Helix 121	AN4	F	404	410	Right-handed alpha
Helix 122	AN5	F	420	425	Right-handed alpha
Helix 123	AN6	F	425	433	Right-handed alpha
Helix 124	AN7	F	439	444	Right-handed alpha
Helix 125	AN8	F	448	453	Right-handed alpha
Helix 126	AN9	G	5	39	Right-handed alpha
Helix 127	AO1	G	42	57	Right-handed alpha
Helix 128	AO2	G	58	62	Right-handed 310
Helix 129	AO3	G	64	69	Right-handed 310
Helix 130	AO4	G	92	109	Right-handed alpha
Helix 131	AO5	G	119	128	Right-handed alpha
Helix 132	AO6	G	144	161	Right-handed alpha
Helix 133	AO7	G	210	265	Right-handed alpha
Helix 134	AO8	G	265	283	Right-handed alpha
Helix 135	AO9	H	91	103	Right-handed alpha
Helix 136	AP1	H	111	126	Right-handed alpha
Helix 137	AP2	H	129	133	Right-handed 310
Helix 138	AP3	I	5	24	Right-handed alpha
Helix 139	AP4	I	25	144	Right-handed alpha
Helix 140	AP5	J	5	142	Right-handed alpha
Helix 141	AP6	J	145	155	Right-handed alpha
Helix 142	AP7	K	49	71	Right-handed alpha
Helix 143	AP8	K	78	95	Right-handed alpha
Helix 144	AP9	K	101	125	Right-handed alpha
Helix 145	AQ1	K	144	170	Right-handed alpha
Helix 146	AQ2	K	172	177	Right-handed alpha
Helix 147	AQ3	K	181	185	Right-handed 310
Helix 148	AQ4	K	190	228	Right-handed alpha
Helix 149	AQ5	K	232	267	Right-handed alpha
Helix 150	AQ6	L	6	21	Right-handed alpha
Helix 151	AQ7	L	22	40	Right-handed alpha
Helix 152	AQ8	L	41	46	Right-handed alpha
Helix 153	AQ9	L	52	65	Right-handed alpha
Helix 154	AR1	L	73	83	Right-handed alpha
Helix 155	AR2	L	84	87	Right-handed 310
Helix 156	AR3	L	89	104	Right-handed alpha
Helix 157	AR4	L	126	133	Right-handed alpha
Helix 158	AR5	L	138	142	Right-handed 310
Helix 159	AR6	L	143	158	Right-handed alpha
Helix 160	AR7	L	159	161	Right-handed 310
Helix 161	AR8	M	4	42	Right-handed alpha
Helix 162	AR9	M	45	77	Right-handed alpha
Helix 163	AS1	N	4	42	Right-handed alpha
Helix 164	AS2	N	45	77	Right-handed alpha
Helix 165	AS3	O	4	42	Right-handed alpha
Helix 166	AS4	O	45	77	Right-handed alpha
Helix 167	AS5	P	4	42	Right-handed alpha
Helix 168	AS6	P	45	77	Right-handed alpha
Helix 169	AS7	Q	4	42	Right-handed alpha
Helix 170	AS8	Q	45	77	Right-handed alpha
Helix 171	AS9	R	4	42	Right-handed alpha
Helix 172	AT1	R	45	77	Right-handed alpha
Helix 173	AT2	S	4	42	Right-handed alpha
Helix 174	AT3	S	45	77	Right-handed alpha
Helix 175	AT4	T	4	42	Right-handed alpha
Helix 176	AT5	T	45	77	Right-handed alpha
Helix 177	AT6	U	4	42	Right-handed alpha
Helix 178	AT7	U	45	77	Right-handed alpha
Helix 179	AT8	V	4	42	Right-handed alpha
Helix 180	AT9	V	45	77	Right-handed alpha

There are 37 sheets in PDB entry 5T4P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	35	first strand
Strand 2	A	38	39	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	60	61	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	65	first strand
Strand 2	A	72	73	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	99	first strand
Strand 2	A	125	127	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	170	first strand
Strand 2	A	330	332	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	197	200	first strand
Strand 2	A	225	227	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	258	first strand
Strand 2	A	323	326	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	35	first strand
Strand 2	B	38	41	anti-parallel
Strand 3	B	71	73	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	54	first strand
Strand 2	B	60	62	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	109	first strand
Strand 2	B	223	225	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	167	first strand
Strand 2	B	351	354	parallel
Strand 3	B	369	375	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	257	first strand
Strand 2	B	323	325	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	35	first strand
Strand 2	C	38	42	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	60	61	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	98	first strand
Strand 2	C	126	127	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	195	197	first strand
Strand 2	C	259	261	parallel
Strand 3	C	328	329	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	257	first strand
Strand 2	C	323	325	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	29	first strand
Strand 2	D	40	41	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	79	first strand
Strand 2	D	105	107	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	88	first strand
Strand 2	D	204	205	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	174	177	first strand
Strand 2	D	238	241	parallel
Strand 3	D	291	294	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	317	318	first strand
Strand 2	D	340	341	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	9	first strand
Strand 2	E	12	16	anti-parallel
Strand 3	E	50	51	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	41	42	first strand
Strand 2	E	53	54	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	146	147	first strand
Strand 2	E	289	295	parallel
Strand 3	E	236	240	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	178	181	first strand
Strand 2	E	206	208	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	28	29	first strand
Strand 2	F	40	41	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	77	79	first strand
Strand 2	F	105	107	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	87	88	first strand
Strand 2	F	204	205	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	174	177	first strand
Strand 2	F	238	241	parallel
Strand 3	F	291	294	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	317	318	first strand
Strand 2	F	340	341	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	114	116	first strand
Strand 2	G	132	135	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	167	171	first strand
Strand 2	G	183	187	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	206	207	first strand
Strand 2	H	41	42	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	8	10	first strand
Strand 2	H	75	80	parallel
Strand 3	H	67	72	anti-parallel
Strand 4	H	44	45	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	25	26	first strand
Strand 2	H	31	32	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	53	54	first strand
Strand 2	H	58	59	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5T4P

Analysis of interatomic Contacts of Structural Units in PDB entry:
5T4P