Analysis of interatomic Contacts of Structural Units in PDB entry:
5T4Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5T4Q entry

There are 22 chains in PDB entry 5T4Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLN 511
B	GLN 2	GLN 511
C	ASN 4	GLN 511
D	HIS -6	LEU 459
E	HIS -6	LEU 459
F	HIS -6	LEU 459
G	ALA 1	ALA 284
H	ALA 1	LYS 136
I	ASN 2	LEU 156
J	ASN 2	LEU 156
K	MET 46	SER 268
L	GLU 2	GLY 161
M	ASN 3	ALA 77
N	ASN 3	ALA 77
O	ASN 3	ALA 77
P	ASN 3	ALA 77
Q	ASN 3	ALA 77
R	ASN 3	ALA 77
S	ASN 3	ALA 77
T	ASN 3	ALA 77
U	ASN 3	ALA 77
V	ASN 3	ALA 77

There are198 helices in PDB entry 5T4Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	13	Right-handed alpha
Helix 2	AA2	A	14	19	Right-handed alpha
Helix 3	AA3	A	177	182	Right-handed alpha
Helix 4	AA4	A	183	189	Right-handed alpha
Helix 5	AA5	A	201	214	Right-handed alpha
Helix 6	AA6	A	231	237	Right-handed alpha
Helix 7	AA7	A	237	247	Right-handed alpha
Helix 8	AA8	A	263	268	Right-handed alpha
Helix 9	AA9	A	271	276	Right-handed alpha
Helix 10	AB1	A	292	297	Right-handed alpha
Helix 11	AB2	A	339	349	Right-handed alpha
Helix 12	AB3	A	356	363	Right-handed alpha
Helix 13	AB4	A	383	389	Right-handed alpha
Helix 14	AB5	A	393	407	Right-handed alpha
Helix 15	AB6	A	414	420	Right-handed alpha
Helix 16	AB7	A	442	451	Right-handed alpha
Helix 17	AB8	A	461	476	Right-handed alpha
Helix 18	AB9	A	479	490	Right-handed alpha
Helix 19	AC1	A	493	507	Right-handed alpha
Helix 20	AC2	B	5	18	Right-handed alpha
Helix 21	AC3	B	181	187	Right-handed alpha
Helix 22	AC4	B	201	215	Right-handed alpha
Helix 23	AC5	B	237	242	Right-handed alpha
Helix 24	AC6	B	245	250	Right-handed alpha
Helix 25	AC7	B	262	276	Right-handed alpha
Helix 26	AC8	B	288	294	Right-handed alpha
Helix 27	AC9	B	306	311	Right-handed alpha
Helix 28	AD1	B	339	348	Right-handed alpha
Helix 29	AD2	B	377	382	Right-handed 310
Helix 30	AD3	B	392	406	Right-handed alpha
Helix 31	AD4	B	414	431	Right-handed alpha
Helix 32	AD5	B	442	451	Right-handed alpha
Helix 33	AD6	B	463	480	Right-handed alpha
Helix 34	AD7	B	482	489	Right-handed 310
Helix 35	AD8	B	493	510	Right-handed alpha
Helix 36	AD9	C	9	18	Right-handed alpha
Helix 37	AE1	C	100	104	Right-handed 310
Helix 38	AE2	C	150	157	Right-handed alpha
Helix 39	AE3	C	181	187	Right-handed alpha
Helix 40	AE4	C	201	215	Right-handed alpha
Helix 41	AE5	C	240	249	Right-handed 310
Helix 42	AE6	C	264	274	Right-handed 310
Helix 43	AE7	C	288	293	Right-handed alpha
Helix 44	AE8	C	297	301	Right-handed 310
Helix 45	AE9	C	307	312	Right-handed alpha
Helix 46	AF1	C	339	349	Right-handed alpha
Helix 47	AF2	C	383	388	Right-handed alpha
Helix 48	AF3	C	393	405	Right-handed alpha
Helix 49	AF4	C	413	420	Right-handed 310
Helix 50	AF5	C	440	450	Right-handed alpha
Helix 51	AF6	C	462	480	Right-handed alpha
Helix 52	AF7	C	482	488	Right-handed 310
Helix 53	AF8	C	493	509	Right-handed alpha
Helix 54	AF9	D	131	136	Right-handed alpha
Helix 55	AG1	D	155	169	Right-handed alpha
Helix 56	AG2	D	188	196	Right-handed alpha
Helix 57	AG3	D	212	217	Right-handed alpha
Helix 58	AG4	D	218	234	Right-handed alpha
Helix 59	AG5	D	244	254	Right-handed alpha
Helix 60	AG6	D	270	281	Right-handed alpha
Helix 61	AG7	D	305	315	Right-handed alpha
Helix 62	AG8	D	322	329	Right-handed alpha
Helix 63	AG9	D	350	370	Right-handed alpha
Helix 64	AH1	D	370	375	Right-handed alpha
Helix 65	AH2	D	383	400	Right-handed alpha
Helix 66	AH3	D	405	410	Right-handed alpha
Helix 67	AH4	D	419	426	Right-handed alpha
Helix 68	AH5	D	426	431	Right-handed alpha
Helix 69	AH6	D	449	459	Right-handed alpha
Helix 70	AH7	E	131	136	Right-handed alpha
Helix 71	AH8	E	154	166	Right-handed alpha
Helix 72	AH9	E	182	195	Right-handed alpha
Helix 73	AI1	E	212	218	Right-handed alpha
Helix 74	AI2	E	220	227	Right-handed alpha
Helix 75	AI3	E	228	233	Right-handed 310
Helix 76	AI4	E	244	257	Right-handed alpha
Helix 77	AI5	E	270	276	Right-handed alpha
Helix 78	AI6	E	277	281	Right-handed 310
Helix 79	AI7	E	305	315	Right-handed alpha
Helix 80	AI8	E	350	376	Right-handed alpha
Helix 81	AI9	E	384	389	Right-handed alpha
Helix 82	AJ1	E	391	398	Right-handed alpha
Helix 83	AJ2	E	420	428	Right-handed alpha
Helix 84	AJ3	E	450	455	Right-handed alpha
Helix 85	AJ4	F	154	163	Right-handed alpha
Helix 86	AJ5	F	164	170	Right-handed alpha
Helix 87	AJ6	F	184	187	Right-handed 310
Helix 88	AJ7	F	188	193	Right-handed alpha
Helix 89	AJ8	F	219	232	Right-handed alpha
Helix 90	AJ9	F	244	257	Right-handed alpha
Helix 91	AK1	F	270	280	Right-handed alpha
Helix 92	AK2	F	305	315	Right-handed alpha
Helix 93	AK3	F	323	328	Right-handed alpha
Helix 94	AK4	F	350	368	Right-handed alpha
Helix 95	AK5	F	368	373	Right-handed alpha
Helix 96	AK6	F	383	400	Right-handed alpha
Helix 97	AK7	F	419	425	Right-handed alpha
Helix 98	AK8	F	451	459	Right-handed alpha
Helix 99	AK9	G	4	39	Right-handed alpha
Helix 100	AL1	G	42	56	Right-handed alpha
Helix 101	AL2	G	89	107	Right-handed alpha
Helix 102	AL3	G	118	125	Right-handed alpha
Helix 103	AL4	G	148	160	Right-handed alpha
Helix 104	AL5	G	210	230	Right-handed alpha
Helix 105	AL6	G	231	251	Right-handed alpha
Helix 106	AL7	G	253	277	Right-handed alpha
Helix 107	AL8	G	278	281	Right-handed 310
Helix 108	AL9	H	88	90	Right-handed 310
Helix 109	AM1	H	91	103	Right-handed alpha
Helix 110	AM2	H	117	125	Right-handed alpha
Helix 111	AM3	H	127	132	Right-handed alpha
Helix 112	AM4	I	6	34	Right-handed alpha
Helix 113	AM5	I	34	127	Right-handed alpha
Helix 114	AM6	I	127	142	Right-handed alpha
Helix 115	AM7	J	6	25	Right-handed alpha
Helix 116	AM8	J	25	31	Right-handed alpha
Helix 117	AM9	J	33	121	Right-handed alpha
Helix 118	AN1	J	123	139	Right-handed alpha
Helix 119	AN2	J	146	154	Right-handed alpha
Helix 120	AN3	K	50	65	Right-handed alpha
Helix 121	AN4	K	77	94	Right-handed alpha
Helix 122	AN5	K	103	121	Right-handed alpha
Helix 123	AN6	K	144	168	Right-handed alpha
Helix 124	AN7	K	172	178	Right-handed alpha
Helix 125	AN8	K	180	184	Right-handed 310
Helix 126	AN9	K	191	228	Right-handed alpha
Helix 127	AO1	K	233	238	Right-handed alpha
Helix 128	AO2	K	239	267	Right-handed alpha
Helix 129	AO3	L	3	5	Right-handed 310
Helix 130	AO4	L	6	13	Right-handed alpha
Helix 131	AO5	L	18	22	Right-handed 310
Helix 132	AO6	L	25	37	Right-handed alpha
Helix 133	AO7	L	42	48	Right-handed alpha
Helix 134	AO8	L	52	63	Right-handed alpha
Helix 135	AO9	L	69	83	Right-handed alpha
Helix 136	AP1	L	90	100	Right-handed alpha
Helix 137	AP2	L	125	132	Right-handed alpha
Helix 138	AP3	L	143	146	Right-handed 310
Helix 139	AP4	L	147	158	Right-handed alpha
Helix 140	AP5	M	4	17	Right-handed alpha
Helix 141	AP6	M	20	41	Right-handed alpha
Helix 142	AP7	M	49	58	Right-handed alpha
Helix 143	AP8	M	59	63	Right-handed 310
Helix 144	AP9	M	64	69	Right-handed alpha
Helix 145	AQ1	M	70	75	Right-handed 310
Helix 146	AQ2	N	4	17	Right-handed alpha
Helix 147	AQ3	N	20	41	Right-handed alpha
Helix 148	AQ4	N	49	58	Right-handed alpha
Helix 149	AQ5	N	59	63	Right-handed 310
Helix 150	AQ6	N	64	69	Right-handed alpha
Helix 151	AQ7	N	70	75	Right-handed 310
Helix 152	AQ8	O	4	17	Right-handed alpha
Helix 153	AQ9	O	20	42	Right-handed alpha
Helix 154	AR1	O	49	58	Right-handed alpha
Helix 155	AR2	O	59	62	Right-handed 310
Helix 156	AR3	O	63	69	Right-handed alpha
Helix 157	AR4	O	70	75	Right-handed 310
Helix 158	AR5	P	4	17	Right-handed alpha
Helix 159	AR6	P	20	42	Right-handed alpha
Helix 160	AR7	P	49	58	Right-handed alpha
Helix 161	AR8	P	59	63	Right-handed 310
Helix 162	AR9	P	66	75	Right-handed 310
Helix 163	AS1	Q	4	17	Right-handed alpha
Helix 164	AS2	Q	20	42	Right-handed alpha
Helix 165	AS3	Q	49	58	Right-handed alpha
Helix 166	AS4	Q	59	63	Right-handed 310
Helix 167	AS5	Q	64	69	Right-handed alpha
Helix 168	AS6	Q	70	75	Right-handed 310
Helix 169	AS7	R	4	17	Right-handed alpha
Helix 170	AS8	R	20	41	Right-handed alpha
Helix 171	AS9	R	49	58	Right-handed alpha
Helix 172	AT1	R	59	62	Right-handed 310
Helix 173	AT2	R	63	69	Right-handed alpha
Helix 174	AT3	R	70	75	Right-handed 310
Helix 175	AT4	S	4	17	Right-handed alpha
Helix 176	AT5	S	20	41	Right-handed alpha
Helix 177	AT6	S	49	58	Right-handed alpha
Helix 178	AT7	S	59	63	Right-handed 310
Helix 179	AT8	S	64	69	Right-handed alpha
Helix 180	AT9	S	70	75	Right-handed 310
Helix 181	AU1	T	4	17	Right-handed alpha
Helix 182	AU2	T	20	41	Right-handed alpha
Helix 183	AU3	T	49	58	Right-handed alpha
Helix 184	AU4	T	59	62	Right-handed 310
Helix 185	AU5	T	63	69	Right-handed alpha
Helix 186	AU6	T	70	75	Right-handed 310
Helix 187	AU7	U	4	17	Right-handed alpha
Helix 188	AU8	U	20	41	Right-handed alpha
Helix 189	AU9	U	49	58	Right-handed alpha
Helix 190	AV1	U	59	62	Right-handed 310
Helix 191	AV2	U	63	69	Right-handed alpha
Helix 192	AV3	U	70	75	Right-handed 310
Helix 193	AV4	V	4	17	Right-handed alpha
Helix 194	AV5	V	20	41	Right-handed alpha
Helix 195	AV6	V	49	58	Right-handed alpha
Helix 196	AV7	V	59	63	Right-handed 310
Helix 197	AV8	V	64	69	Right-handed alpha
Helix 198	AV9	V	70	75	Right-handed 310

There are 28 sheets in PDB entry 5T4Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	33	first strand
Strand 2	A	38	42	anti-parallel
Strand 3	A	71	75	anti-parallel
Strand 4	A	61	63	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	169	first strand
Strand 2	A	329	331	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	224	first strand
Strand 2	A	194	196	parallel
Strand 3	A	257	260	parallel
Strand 4	A	325	327	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	35	first strand
Strand 2	B	38	41	anti-parallel
Strand 3	B	71	72	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	99	first strand
Strand 2	B	125	127	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	108	first strand
Strand 2	B	223	224	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	329	332	first strand
Strand 2	B	165	170	parallel
Strand 3	B	351	354	parallel
Strand 4	B	373	374	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	259	first strand
Strand 2	B	323	327	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	41	first strand
Strand 2	C	71	74	anti-parallel
Strand 3	C	60	63	anti-parallel
Strand 4	C	52	54	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	67	first strand
Strand 2	D	7	8	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	99	first strand
Strand 2	C	125	127	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	167	169	first strand
Strand 2	C	325	331	parallel
Strand 3	C	257	260	parallel
Strand 4	C	195	196	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	32	first strand
Strand 2	D	37	38	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	44	first strand
Strand 2	D	52	54	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	89	first strand
Strand 2	D	93	94	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	147	first strand
Strand 2	D	318	319	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	27	32	first strand
Strand 2	E	37	42	anti-parallel
Strand 3	E	53	54	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	174	176	first strand
Strand 2	E	202	204	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	237	239	first strand
Strand 2	E	290	292	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	-4	-3	first strand
Strand 2	F	71	73	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	12	13	first strand
Strand 2	F	52	55	anti-parallel
Strand 3	F	38	44	anti-parallel
Strand 4	F	29	31	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	146	147	first strand
Strand 2	F	318	319	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	238	240	first strand
Strand 2	F	291	293	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	116	117	first strand
Strand 2	G	135	136	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	169	172	first strand
Strand 2	G	182	185	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	5	first strand
Strand 2	H	19	20	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	14	16	first strand
Strand 2	H	8	9	anti-parallel
Strand 3	H	76	79	parallel
Strand 4	H	68	71	anti-parallel
Strand 5	H	43	44	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	50	53	first strand
Strand 2	H	59	62	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5T4Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
5T4Q