Analysis of interatomic Contacts of Structural Units in PDB entry:
5T4T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5T4T entry

There are 2 chains in PDB entry 5T4T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ALA 5SER 299
A
 HIS 0ALA 300
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5T4T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
43 48Right-handed 310
Helix 2
AA2
B
50 56Right-handed alpha
Helix 3
AA3
B
80 83Right-handed 310
Helix 4
AA4
B
84 99Right-handed alpha
Helix 5
AA5
B
110 123Right-handed alpha
Helix 6
AA6
B
137 144Right-handed alpha
Helix 7
AA7
B
146 153Right-handed alpha
Helix 8
AA8
B
154 159Right-handed alpha
Helix 9
AA9
B
164 171Right-handed alpha
Helix 10
AB1
B
173 185Right-handed alpha
Helix 11
AB2
B
195 208Right-handed alpha
Helix 12
AB3
B
208 224Right-handed alpha
Helix 13
AB4
B
224 236Right-handed alpha
Helix 14
AB5
B
259 268Right-handed alpha
Helix 15
AB6
B
281 286Right-handed alpha
Helix 16
AB7
B
286 299Right-handed alpha
Helix 17
AB8
A
43 48Right-handed 310
Helix 18
AB9
A
50 56Right-handed alpha
Helix 19
AC1
A
80 83Right-handed 310
Helix 20
AC2
A
84 99Right-handed alpha
Helix 21
AC3
A
110 123Right-handed alpha
Helix 22
AC4
A
137 144Right-handed alpha
Helix 23
AC5
A
146 153Right-handed alpha
Helix 24
AC6
A
154 160Right-handed alpha
Helix 25
AC7
A
164 171Right-handed alpha
Helix 26
AC8
A
173 185Right-handed alpha
Helix 27
AC9
A
195 207Right-handed alpha
Helix 28
AD1
A
208 224Right-handed alpha
Helix 29
AD2
A
224 236Right-handed alpha
Helix 30
AD3
A
259 268Right-handed alpha
Helix 31
AD4
A
281 286Right-handed alpha
Helix 32
AD5
A
286 300Right-handed alpha
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There are 2 sheets in PDB entry 5T4T. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 16first strand
Strand 2
B
23 29anti-parallel
Strand 3
B
59 63anti-parallel
Strand 4
B
33 37parallel
Strand 5
B
104 109parallel
Strand 6
B
127 133parallel
Strand 7
B
244 249parallel
Strand 8
B
271 276parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 16first strand
Strand 2
A
23 29anti-parallel
Strand 3
A
59 63anti-parallel
Strand 4
A
33 37parallel
Strand 5
A
104 109parallel
Strand 6
A
127 133parallel
Strand 7
A
244 249parallel
Strand 8
A
271 276parallel
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