Analysis of interatomic Contacts of Structural Units in PDB entry:
5T4Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5T4Y entry

There are 2 chains in PDB entry 5T4Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 1	TRP 552
D	GLY 210	ARG 910

There are 77 helices in PDB entry 5T4Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	7	Right-handed alpha
Helix 2	AA2	A	16	20	Right-handed alpha
Helix 3	AA3	A	21	23	Right-handed 310
Helix 4	AA4	A	24	39	Right-handed alpha
Helix 5	AA5	A	48	53	Right-handed 310
Helix 6	AA6	A	68	76	Right-handed alpha
Helix 7	AA7	A	84	109	Right-handed alpha
Helix 8	AA8	A	118	142	Right-handed alpha
Helix 9	AA9	A	153	160	Right-handed 310
Helix 10	AB1	A	166	185	Right-handed alpha
Helix 11	AB2	A	196	213	Right-handed alpha
Helix 12	AB3	A	226	236	Right-handed alpha
Helix 13	AB4	A	238	244	Right-handed alpha
Helix 14	AB5	A	252	256	Right-handed 310
Helix 15	AB6	A	258	262	Right-handed 310
Helix 16	AB7	A	285	289	Right-handed 310
Helix 17	AB8	A	293	297	Right-handed 310
Helix 18	AB9	A	305	311	Right-handed alpha
Helix 19	AC1	A	340	344	Right-handed alpha
Helix 20	AC2	A	407	422	Right-handed alpha
Helix 21	AC3	A	425	443	Right-handed alpha
Helix 22	AC4	A	449	455	Right-handed alpha
Helix 23	AC5	A	469	485	Right-handed alpha
Helix 24	AC6	A	490	499	Right-handed alpha
Helix 25	AC7	A	500	514	Right-handed alpha
Helix 26	AC8	A	516	522	Right-handed 310
Helix 27	AC9	A	535	542	Right-handed alpha
Helix 28	AD1	D	233	248	Right-handed alpha
Helix 29	AD2	D	251	255	Right-handed 310
Helix 30	AD3	D	294	299	Right-handed alpha
Helix 31	AD4	D	376	383	Right-handed alpha
Helix 32	AD5	D	409	416	Right-handed alpha
Helix 33	AD6	D	535	539	Right-handed 310
Helix 34	AD7	D	601	604	Right-handed 310
Helix 35	AD8	D	725	729	Right-handed 310
Helix 36	AD9	D	779	785	Right-handed alpha
Helix 37	AE1	D	815	821	Right-handed alpha
Helix 38	AE2	D	889	895	Right-handed alpha
Helix 39	AE3	D	909	914	Right-handed 310
Helix 40	AE4	D	939	941	Right-handed 310
Helix 41	AE5	D	961	966	Right-handed alpha
Helix 42	AE6	B	21	23	Right-handed 310
Helix 43	AE7	B	24	39	Right-handed alpha
Helix 44	AE8	B	48	53	Right-handed 310
Helix 45	AE9	B	68	77	Right-handed alpha
Helix 46	AF1	B	84	110	Right-handed alpha
Helix 47	AF2	B	118	142	Right-handed alpha
Helix 48	AF3	B	153	160	Right-handed 310
Helix 49	AF4	B	166	185	Right-handed alpha
Helix 50	AF5	B	196	212	Right-handed alpha
Helix 51	AF6	B	226	237	Right-handed alpha
Helix 52	AF7	B	238	244	Right-handed alpha
Helix 53	AF8	B	252	262	Right-handed 310
Helix 54	AF9	B	285	289	Right-handed 310
Helix 55	AG1	B	293	297	Right-handed 310
Helix 56	AG2	B	305	311	Right-handed alpha
Helix 57	AG3	B	339	343	Right-handed 310
Helix 58	AG4	B	406	422	Right-handed alpha
Helix 59	AG5	B	425	442	Right-handed alpha
Helix 60	AG6	B	449	454	Right-handed alpha
Helix 61	AG7	B	469	485	Right-handed alpha
Helix 62	AG8	B	490	498	Right-handed alpha
Helix 63	AG9	B	500	514	Right-handed alpha
Helix 64	AH1	B	516	520	Right-handed 310
Helix 65	AH2	B	535	542	Right-handed alpha
Helix 66	AH3	C	233	249	Right-handed alpha
Helix 67	AH4	C	251	255	Right-handed 310
Helix 68	AH5	C	294	299	Right-handed alpha
Helix 69	AH6	C	376	382	Right-handed alpha
Helix 70	AH7	C	409	418	Right-handed alpha
Helix 71	AH8	C	535	539	Right-handed 310
Helix 72	AH9	C	584	587	Right-handed 310
Helix 73	AI1	C	725	729	Right-handed 310
Helix 74	AI2	C	779	786	Right-handed alpha
Helix 75	AI3	C	815	822	Right-handed alpha
Helix 76	AI4	C	890	895	Right-handed alpha
Helix 77	AI5	C	961	966	Right-handed alpha

There are 21 sheets in PDB entry 5T4Y. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	390	392	first strand
Strand 2	A	396	398	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	271	first strand
Strand 2	A	402	405	anti-parallel

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There are 23 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	303	315	first strand
Strand 2	D	211	224	anti-parallel
Strand 3	D	1006	1014	anti-parallel
Strand 4	D	973	980	anti-parallel
Strand 5	D	948	959	anti-parallel
Strand 6	D	872	882	anti-parallel
Strand 7	D	859	869	anti-parallel
Strand 8	D	760	775	anti-parallel
Strand 9	D	741	756	anti-parallel
Strand 10	D	704	716	anti-parallel
Strand 11	D	686	699	anti-parallel
Strand 12	D	613	627	anti-parallel
Strand 13	D	589	599	anti-parallel
Strand 14	D	569	580	anti-parallel
Strand 15	D	543	565	anti-parallel
Strand 16	D	501	524	anti-parallel
Strand 17	D	475	497	anti-parallel
Strand 18	D	441	460	anti-parallel
Strand 19	D	421	435	anti-parallel
Strand 20	D	357	371	anti-parallel
Strand 21	D	338	350	anti-parallel
Strand 22	D	319	331	anti-parallel
Strand 23	D	304	315	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	263	265	first strand
Strand 2	D	271	273	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	719	722	first strand
Strand 2	D	734	737	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	885	887	first strand
Strand 2	D	943	945	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	948	950	first strand
Strand 2	D	984	986	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	348	353	first strand
Strand 2	D	357	361	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	638	640	first strand
Strand 2	D	674	677	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	804	806	first strand
Strand 2	D	850	853	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	390	392	first strand
Strand 2	B	396	398	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	269	271	first strand
Strand 2	B	402	405	anti-parallel

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There are 24 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	753	755	first strand
Strand 2	C	761	767	anti-parallel
Strand 3	C	859	869	anti-parallel
Strand 4	C	872	882	anti-parallel
Strand 5	C	950	959	anti-parallel
Strand 6	C	972	980	anti-parallel
Strand 7	C	1006	1016	anti-parallel
Strand 8	C	211	224	anti-parallel
Strand 9	C	303	315	anti-parallel
Strand 10	C	320	331	anti-parallel
Strand 11	C	338	345	anti-parallel
Strand 12	C	357	371	anti-parallel
Strand 13	C	421	435	anti-parallel
Strand 14	C	441	460	anti-parallel
Strand 15	C	475	494	anti-parallel
Strand 16	C	501	524	anti-parallel
Strand 17	C	543	565	anti-parallel
Strand 18	C	569	580	anti-parallel
Strand 19	C	589	600	anti-parallel
Strand 20	C	615	627	anti-parallel
Strand 21	C	686	699	anti-parallel
Strand 22	C	704	716	anti-parallel
Strand 23	C	740	748	anti-parallel
Strand 24	C	770	777	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	481	498	first strand
Strand 2	C	501	518	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	563	565	first strand
Strand 2	C	569	571	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	719	722	first strand
Strand 2	C	734	737	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	885	887	first strand
Strand 2	C	943	945	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	949	951	first strand
Strand 2	C	983	985	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	348	353	first strand
Strand 2	C	357	361	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	638	640	first strand
Strand 2	C	674	677	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	804	806	first strand
Strand 2	C	850	853	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5T4Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
5T4Y