Analysis of interatomic Contacts of Structural Units in PDB entry:
5T5M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5T5M entry

There are 5 chains in PDB entry 5T5M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ILE 177
A	ILE 179	LEU 569
B	MET 1	LYS 429
C	SER 2	PRO 270
D	MET 1	TYR 26

There are 77 helices in PDB entry 5T5M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	16	Right-handed 310
Helix 2	AA2	A	62	71	Right-handed alpha
Helix 3	AA3	A	72	79	Right-handed alpha
Helix 4	AA4	A	96	107	Right-handed alpha
Helix 5	AA5	A	118	120	Right-handed 310
Helix 6	AA6	A	121	131	Right-handed alpha
Helix 7	AA7	A	146	155	Right-handed alpha
Helix 8	AA8	A	157	173	Right-handed alpha
Helix 9	AA9	A	183	189	Right-handed alpha
Helix 10	AB1	A	207	222	Right-handed alpha
Helix 11	AB2	A	240	250	Right-handed alpha
Helix 12	AB3	A	271	276	Right-handed 310
Helix 13	AB4	A	288	299	Right-handed alpha
Helix 14	AB5	A	320	332	Right-handed alpha
Helix 15	AB6	A	357	374	Right-handed alpha
Helix 16	AB7	A	376	378	Right-handed 310
Helix 17	AB8	A	391	393	Right-handed 310
Helix 18	AB9	A	394	404	Right-handed alpha
Helix 19	AC1	A	404	414	Right-handed alpha
Helix 20	AC2	A	418	423	Right-handed alpha
Helix 21	AC3	A	425	429	Right-handed 310
Helix 22	AC4	A	434	443	Right-handed alpha
Helix 23	AC5	A	443	450	Right-handed alpha
Helix 24	AC6	A	482	492	Right-handed alpha
Helix 25	AC7	A	525	544	Right-handed alpha
Helix 26	AC8	A	547	551	Right-handed 310
Helix 27	AC9	A	554	558	Right-handed 310
Helix 28	AD1	B	35	43	Right-handed alpha
Helix 29	AD2	B	66	81	Right-handed alpha
Helix 30	AD3	B	93	108	Right-handed alpha
Helix 31	AD4	B	115	118	Right-handed 310
Helix 32	AD5	B	119	129	Right-handed alpha
Helix 33	AD6	B	135	143	Right-handed alpha
Helix 34	AD7	B	152	157	Right-handed alpha
Helix 35	AD8	B	159	165	Right-handed alpha
Helix 36	AD9	B	174	179	Right-handed 310
Helix 37	AE1	B	189	194	Right-handed alpha
Helix 38	AE2	B	205	218	Right-handed alpha
Helix 39	AE3	B	232	244	Right-handed alpha
Helix 40	AE4	B	253	258	Right-handed alpha
Helix 41	AE5	B	262	277	Right-handed alpha
Helix 42	AE6	B	292	305	Right-handed alpha
Helix 43	AE7	B	325	332	Right-handed alpha
Helix 44	AE8	B	344	349	Right-handed alpha
Helix 45	AE9	B	350	358	Right-handed alpha
Helix 46	AF1	B	370	375	Right-handed alpha
Helix 47	AF2	B	413	428	Right-handed alpha
Helix 48	AF3	C	22	27	Right-handed alpha
Helix 49	AF4	C	30	36	Right-handed alpha
Helix 50	AF5	C	61	64	Right-handed 310
Helix 51	AF6	C	265	269	Right-handed 310
Helix 52	AF7	D	10	20	Right-handed alpha
Helix 53	AF8	D	23	31	Right-handed alpha
Helix 54	AF9	D	36	44	Right-handed alpha
Helix 55	AG1	D	83	87	Right-handed 310
Helix 56	AG2	D	116	121	Right-handed alpha
Helix 57	AG3	D	122	125	Right-handed 310
Helix 58	AG4	F	28	31	Right-handed 310
Helix 59	AG5	F	35	41	Right-handed alpha
Helix 60	AG6	F	50	57	Right-handed alpha
Helix 61	AG7	F	75	81	Right-handed alpha
Helix 62	AG8	F	96	98	Right-handed 310
Helix 63	AG9	F	119	125	Right-handed alpha
Helix 64	AH1	F	138	143	Right-handed 310
Helix 65	AH2	F	158	164	Right-handed alpha
Helix 66	AH3	F	198	204	Right-handed alpha
Helix 67	AH4	F	243	249	Right-handed alpha
Helix 68	AH5	F	275	281	Right-handed alpha
Helix 69	AH6	F	305	308	Right-handed 310
Helix 70	AH7	F	312	318	Right-handed alpha
Helix 71	AH8	F	337	346	Right-handed alpha
Helix 72	AH9	G	9	12	Right-handed 310
Helix 73	AI1	G	16	22	Right-handed alpha
Helix 74	AI2	G	22	29	Right-handed alpha
Helix 75	AI3	G	29	34	Right-handed alpha
Helix 76	AI4	G	57	61	Right-handed 310
Helix 77	AI5	G	65	70	Right-handed alpha

There are 26 sheets in PDB entry 5T5M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	32	first strand
Strand 2	A	17	27	anti-parallel
Strand 3	A	2	12	anti-parallel
Strand 4	A	40	43	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	32	first strand
Strand 2	A	17	27	anti-parallel
Strand 3	A	2	12	anti-parallel
Strand 4	A	48	51	parallel
Strand 5	A	467	470	anti-parallel
Strand 6	A	495	498	anti-parallel
Strand 7	A	501	505	anti-parallel
Strand 8	A	508	509	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	58	first strand
Strand 2	A	109	117	parallel
Strand 3	A	136	141	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	81	first strand
Strand 2	A	89	90	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	180	first strand
Strand 2	A	228	231	parallel
Strand 3	A	267	269	parallel
Strand 4	A	302	305	parallel
Strand 5	A	380	381	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	313	318	first strand
Strand 2	A	347	352	anti-parallel
Strand 3	A	335	339	anti-parallel
Strand 4	B	130	134	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	517	521	first strand
Strand 2	A	561	565	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	7	first strand
Strand 2	B	19	23	anti-parallel
Strand 3	B	28	32	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	64	first strand
Strand 2	B	55	57	anti-parallel
Strand 3	B	378	379	anti-parallel
Strand 4	B	362	365	parallel
Strand 5	B	337	341	parallel
Strand 6	B	84	88	parallel
Strand 7	B	110	113	parallel
Strand 8	B	310	311	anti-parallel
Strand 9	B	318	319	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	197	199	first strand
Strand 2	B	180	184	parallel
Strand 3	B	145	149	parallel
Strand 4	B	248	252	parallel
Strand 5	B	282	286	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	227	first strand
Strand 2	B	230	231	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	391	394	first strand
Strand 2	B	400	403	anti-parallel

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There are 13 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	56	first strand
Strand 2	C	3	8	anti-parallel
Strand 3	C	66	69	parallel
Strand 4	C	87	90	parallel
Strand 5	C	106	109	parallel
Strand 6	C	125	128	parallel
Strand 7	C	151	154	parallel
Strand 8	C	167	173	parallel
Strand 9	C	187	192	parallel
Strand 10	C	208	211	parallel
Strand 11	C	256	261	parallel
Strand 12	C	236	247	anti-parallel
Strand 13	C	223	233	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	47	first strand
Strand 2	C	38	41	anti-parallel
Strand 3	C	16	17	anti-parallel
Strand 4	C	76	77	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	177	179	first strand
Strand 2	C	196	198	parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	8	first strand
Strand 2	D	75	79	parallel
Strand 3	D	32	35	anti-parallel
Strand 4	D	59	66	parallel
Strand 5	D	50	54	anti-parallel
Strand 6	D	103	109	anti-parallel
Strand 7	D	2	8	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	8	first strand
Strand 2	F	11	16	anti-parallel
Strand 3	F	22	26	anti-parallel
Strand 4	F	86	90	anti-parallel
Strand 5	F	93	94	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	46	48	first strand
Strand 2	F	64	66	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	107	110	first strand
Strand 2	F	254	257	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	130	135	first strand
Strand 2	F	229	234	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	145	149	first strand
Strand 2	F	209	213	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	169	173	first strand
Strand 2	F	184	189	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	260	266	first strand
Strand 2	F	323	330	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	286	287	first strand
Strand 2	F	302	303	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	7	first strand
Strand 2	G	76	80	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	46	49	first strand
Strand 2	G	52	55	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5T5M

Analysis of interatomic Contacts of Structural Units in PDB entry:
5T5M