Analysis of interatomic Contacts of Structural Units in PDB entry:
5T5O

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5T5O entry

There are 11 chains in PDB entry 5T5O (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 1	ASN 229
a	GLY 101	ALA 105
B	SER 1	ASN 229
b	GLY 101	ALA 105
C	SER 1	ASN 229
c	GLY 101	ALA 105
D	SER 1	ASN 229
d	GLY 101	ALA 105
E	SER 1	ASN 229
e	GLY 101	ALA 105
F	SER 1	LEU 98

There are 48 helices in PDB entry 5T5O. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	94	98	Right-handed 310
Helix 2	AA2	A	102	106	Right-handed 310
Helix 3	AA3	A	108	112	Right-handed 310
Helix 4	AA4	A	151	156	Right-handed alpha
Helix 5	AA5	A	193	198	Right-handed alpha
Helix 6	AA6	B	94	98	Right-handed 310
Helix 7	AA7	B	102	106	Right-handed 310
Helix 8	AA8	B	108	112	Right-handed 310
Helix 9	AA9	B	124	128	Right-handed 310
Helix 10	AB1	B	151	156	Right-handed alpha
Helix 11	AB2	B	193	198	Right-handed alpha
Helix 12	AB3	C	94	98	Right-handed 310
Helix 13	AB4	C	108	112	Right-handed 310
Helix 14	AB5	C	151	156	Right-handed alpha
Helix 15	AB6	C	193	198	Right-handed alpha
Helix 16	AB7	D	94	98	Right-handed 310
Helix 17	AB8	D	102	106	Right-handed 310
Helix 18	AB9	D	108	112	Right-handed 310
Helix 19	AC1	D	151	156	Right-handed alpha
Helix 20	AC2	D	193	198	Right-handed alpha
Helix 21	AC3	E	94	98	Right-handed 310
Helix 22	AC4	E	102	106	Right-handed 310
Helix 23	AC5	E	124	128	Right-handed 310
Helix 24	AC6	E	151	156	Right-handed alpha
Helix 25	AC7	E	193	198	Right-handed alpha
Helix 26	AC8	F	94	98	Right-handed 310
Helix 27	AC9	F	108	112	Right-handed 310
Helix 28	AD1	F	151	156	Right-handed alpha
Helix 29	AD2	F	193	198	Right-handed alpha
Helix 30	AD3	G	94	98	Right-handed 310
Helix 31	AD4	G	108	112	Right-handed 310
Helix 32	AD5	G	124	128	Right-handed 310
Helix 33	AD6	G	151	156	Right-handed alpha
Helix 34	AD7	G	193	198	Right-handed alpha
Helix 35	AD8	H	94	98	Right-handed 310
Helix 36	AD9	H	102	106	Right-handed 310
Helix 37	AE1	H	151	156	Right-handed alpha
Helix 38	AE2	H	193	198	Right-handed alpha
Helix 39	AE3	I	94	98	Right-handed 310
Helix 40	AE4	I	102	106	Right-handed 310
Helix 41	AE5	I	108	112	Right-handed 310
Helix 42	AE6	I	124	128	Right-handed 310
Helix 43	AE7	I	151	156	Right-handed alpha
Helix 44	AE8	I	193	198	Right-handed alpha
Helix 45	AE9	J	94	98	Right-handed 310
Helix 46	AF1	J	108	112	Right-handed 310
Helix 47	AF2	J	151	156	Right-handed alpha
Helix 48	AF3	J	193	198	Right-handed alpha

There are 40 sheets in PDB entry 5T5O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	7	first strand
Strand 2	A	214	227	anti-parallel
Strand 3	A	28	30	anti-parallel
Strand 4	A	23	25	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	7	first strand
Strand 2	A	214	227	anti-parallel
Strand 3	A	59	71	anti-parallel
Strand 4	A	161	168	anti-parallel
Strand 5	A	173	179	anti-parallel
Strand 6	A	185	191	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	20	first strand
Strand 2	A	45	50	anti-parallel
Strand 3	A	201	212	anti-parallel
Strand 4	A	54	55	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	20	first strand
Strand 2	A	45	50	anti-parallel
Strand 3	A	201	212	anti-parallel
Strand 4	A	77	85	anti-parallel
Strand 5	A	115	120	anti-parallel
Strand 6	A	134	139	anti-parallel
Strand 7	A	146	149	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	7	first strand
Strand 2	B	214	227	anti-parallel
Strand 3	B	28	30	anti-parallel
Strand 4	B	23	25	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	7	first strand
Strand 2	B	214	227	anti-parallel
Strand 3	B	59	71	anti-parallel
Strand 4	B	161	168	anti-parallel
Strand 5	B	173	179	anti-parallel
Strand 6	B	185	191	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	20	first strand
Strand 2	B	45	50	anti-parallel
Strand 3	B	201	212	anti-parallel
Strand 4	B	54	55	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	20	first strand
Strand 2	B	45	50	anti-parallel
Strand 3	B	201	212	anti-parallel
Strand 4	B	77	85	anti-parallel
Strand 5	B	115	120	anti-parallel
Strand 6	B	134	139	anti-parallel
Strand 7	B	146	149	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	214	227	anti-parallel
Strand 3	C	28	30	anti-parallel
Strand 4	C	23	25	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	214	227	anti-parallel
Strand 3	C	59	71	anti-parallel
Strand 4	C	161	168	anti-parallel
Strand 5	C	173	179	anti-parallel
Strand 6	C	185	191	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	20	first strand
Strand 2	C	45	50	anti-parallel
Strand 3	C	201	212	anti-parallel
Strand 4	C	54	55	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	20	first strand
Strand 2	C	45	50	anti-parallel
Strand 3	C	201	212	anti-parallel
Strand 4	C	77	85	anti-parallel
Strand 5	C	115	120	anti-parallel
Strand 6	C	134	139	anti-parallel
Strand 7	C	146	149	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	214	227	anti-parallel
Strand 3	D	28	30	anti-parallel
Strand 4	D	23	25	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	214	227	anti-parallel
Strand 3	D	59	71	anti-parallel
Strand 4	D	161	168	anti-parallel
Strand 5	D	173	179	anti-parallel
Strand 6	D	185	191	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	20	first strand
Strand 2	D	45	50	anti-parallel
Strand 3	D	201	212	anti-parallel
Strand 4	D	54	55	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	20	first strand
Strand 2	D	45	50	anti-parallel
Strand 3	D	201	212	anti-parallel
Strand 4	D	77	85	anti-parallel
Strand 5	D	115	120	anti-parallel
Strand 6	D	134	139	anti-parallel
Strand 7	D	146	149	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	214	227	anti-parallel
Strand 3	E	28	30	anti-parallel
Strand 4	E	23	25	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	214	227	anti-parallel
Strand 3	E	59	71	anti-parallel
Strand 4	E	161	168	anti-parallel
Strand 5	E	173	179	anti-parallel
Strand 6	E	185	191	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	16	20	first strand
Strand 2	E	45	50	anti-parallel
Strand 3	E	201	212	anti-parallel
Strand 4	E	54	55	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	16	20	first strand
Strand 2	E	45	50	anti-parallel
Strand 3	E	201	212	anti-parallel
Strand 4	E	77	85	anti-parallel
Strand 5	E	115	120	anti-parallel
Strand 6	E	134	139	anti-parallel
Strand 7	E	146	149	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	214	227	anti-parallel
Strand 3	F	28	30	anti-parallel
Strand 4	F	23	25	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	214	227	anti-parallel
Strand 3	F	59	71	anti-parallel
Strand 4	F	161	168	anti-parallel
Strand 5	F	173	179	anti-parallel
Strand 6	F	185	191	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	16	20	first strand
Strand 2	F	45	50	anti-parallel
Strand 3	F	201	212	anti-parallel
Strand 4	F	54	55	anti-parallel

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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	16	20	first strand
Strand 2	F	45	50	anti-parallel
Strand 3	F	201	212	anti-parallel
Strand 4	F	77	85	anti-parallel
Strand 5	F	115	120	anti-parallel
Strand 6	F	134	139	anti-parallel
Strand 7	F	146	149	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	7	first strand
Strand 2	G	214	227	anti-parallel
Strand 3	G	28	30	anti-parallel
Strand 4	G	23	25	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	7	first strand
Strand 2	G	214	227	anti-parallel
Strand 3	G	59	71	anti-parallel
Strand 4	G	161	168	anti-parallel
Strand 5	G	173	179	anti-parallel
Strand 6	G	185	191	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	16	20	first strand
Strand 2	G	45	50	anti-parallel
Strand 3	G	201	212	anti-parallel
Strand 4	G	54	55	anti-parallel

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There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	16	20	first strand
Strand 2	G	45	50	anti-parallel
Strand 3	G	201	212	anti-parallel
Strand 4	G	77	85	anti-parallel
Strand 5	G	115	120	anti-parallel
Strand 6	G	134	139	anti-parallel
Strand 7	G	146	149	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	214	227	anti-parallel
Strand 3	H	28	30	anti-parallel
Strand 4	H	23	25	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	214	227	anti-parallel
Strand 3	H	59	71	anti-parallel
Strand 4	H	161	168	anti-parallel
Strand 5	H	173	179	anti-parallel
Strand 6	H	185	191	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	16	20	first strand
Strand 2	H	45	50	anti-parallel
Strand 3	H	201	212	anti-parallel
Strand 4	H	54	55	anti-parallel

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There are 7 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	16	20	first strand
Strand 2	H	45	50	anti-parallel
Strand 3	H	201	212	anti-parallel
Strand 4	H	77	85	anti-parallel
Strand 5	H	115	120	anti-parallel
Strand 6	H	134	139	anti-parallel
Strand 7	H	146	149	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	7	first strand
Strand 2	I	214	227	anti-parallel
Strand 3	I	28	30	anti-parallel
Strand 4	I	23	25	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	7	first strand
Strand 2	I	214	227	anti-parallel
Strand 3	I	59	71	anti-parallel
Strand 4	I	161	168	anti-parallel
Strand 5	I	173	179	anti-parallel
Strand 6	I	185	191	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	16	20	first strand
Strand 2	I	45	50	anti-parallel
Strand 3	I	201	212	anti-parallel
Strand 4	I	54	55	anti-parallel

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There are 7 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	16	20	first strand
Strand 2	I	45	50	anti-parallel
Strand 3	I	201	212	anti-parallel
Strand 4	I	77	85	anti-parallel
Strand 5	I	115	120	anti-parallel
Strand 6	I	134	139	anti-parallel
Strand 7	I	146	149	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	4	7	first strand
Strand 2	J	214	227	anti-parallel
Strand 3	J	28	30	anti-parallel
Strand 4	J	23	25	anti-parallel

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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	4	7	first strand
Strand 2	J	214	227	anti-parallel
Strand 3	J	59	71	anti-parallel
Strand 4	J	161	168	anti-parallel
Strand 5	J	173	179	anti-parallel
Strand 6	J	185	191	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	16	20	first strand
Strand 2	J	45	50	anti-parallel
Strand 3	J	201	212	anti-parallel
Strand 4	J	54	55	anti-parallel

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There are 7 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	16	20	first strand
Strand 2	J	45	50	anti-parallel
Strand 3	J	201	212	anti-parallel
Strand 4	J	77	85	anti-parallel
Strand 5	J	115	120	anti-parallel
Strand 6	J	134	139	anti-parallel
Strand 7	J	146	149	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5T5O

Analysis of interatomic Contacts of Structural Units in PDB entry:
5T5O