Analysis of interatomic Contacts of Structural Units in PDB entry:
5T5P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5T5P entry

There are 4 chains in PDB entry 5T5P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1ASN 229
B
 SER 1ASN 229
a
 SER 101VAL 103
b
 SER 101GLY 104
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 5T5P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
94 98Right-handed 310
Helix 2
AA2
A
102 106Right-handed 310
Helix 3
AA3
A
108 112Right-handed 310
Helix 4
AA4
A
151 156Right-handed alpha
Helix 5
AA5
A
193 198Right-handed alpha
Helix 6
AA6
B
94 98Right-handed 310
Helix 7
AA7
B
102 106Right-handed 310
Helix 8
AA8
B
151 156Right-handed alpha
Helix 9
AA9
B
193 198Right-handed alpha
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There are 7 sheets in PDB entry 5T5P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
214 227anti-parallel
Strand 3
A
28 30anti-parallel
Strand 4
A
23 25anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
214 227anti-parallel
Strand 3
A
59 71anti-parallel
Strand 4
A
161 168anti-parallel
Strand 5
A
173 179anti-parallel
Strand 6
A
185 191anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 20first strand
Strand 2
A
45 50anti-parallel
Strand 3
A
201 212anti-parallel
Strand 4
A
54 55anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 20first strand
Strand 2
A
45 50anti-parallel
Strand 3
A
201 212anti-parallel
Strand 4
A
77 85anti-parallel
Strand 5
A
115 120anti-parallel
Strand 6
A
134 139anti-parallel
Strand 7
A
146 149anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
214 227anti-parallel
Strand 3
B
28 30anti-parallel
Strand 4
B
23 25anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
214 227anti-parallel
Strand 3
B
59 71anti-parallel
Strand 4
B
161 168anti-parallel
Strand 5
B
173 179anti-parallel
Strand 6
B
185 191anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 20first strand
Strand 2
B
44 50anti-parallel
Strand 3
B
203 212anti-parallel
Strand 4
B
77 85anti-parallel
Strand 5
B
115 120anti-parallel
Strand 6
B
134 139anti-parallel
Strand 7
B
146 149anti-parallel
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