Analysis of interatomic Contacts of Structural Units in PDB entry:
5T5T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5T5T entry

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 5T5T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 9	ARG 171
A	SER 173	GLN 548
B	ALA 77	ILE 270
C	SER 26	VAL 322

There are 33 helices in PDB entry 5T5T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	50	55	Right-handed alpha
Helix 2	AA2	A	57	71	Right-handed alpha
Helix 3	AA3	A	101	108	Right-handed alpha
Helix 4	AA4	A	112	132	Right-handed alpha
Helix 5	AA5	A	181	186	Right-handed alpha
Helix 6	AA6	A	192	210	Right-handed alpha
Helix 7	AA7	A	218	228	Right-handed alpha
Helix 8	AA8	A	238	249	Right-handed alpha
Helix 9	AA9	A	258	265	Right-handed alpha
Helix 10	AB1	A	265	270	Right-handed alpha
Helix 11	AB2	A	273	277	Right-handed 310
Helix 12	AB3	A	405	418	Right-handed alpha
Helix 13	AB4	A	530	545	Right-handed alpha
Helix 14	AB5	B	97	99	Right-handed 310
Helix 15	AB6	B	156	160	Right-handed 310
Helix 16	AB7	B	161	173	Right-handed alpha
Helix 17	AB8	B	207	212	Right-handed 310
Helix 18	AB9	B	232	236	Right-handed 310
Helix 19	AC1	C	27	33	Right-handed alpha
Helix 20	AC2	C	36	41	Right-handed 310
Helix 21	AC3	C	55	67	Right-handed alpha
Helix 22	AC4	C	86	98	Right-handed alpha
Helix 23	AC5	C	105	110	Right-handed alpha
Helix 24	AC6	C	112	121	Right-handed alpha
Helix 25	AC7	C	136	147	Right-handed alpha
Helix 26	AC8	C	168	180	Right-handed alpha
Helix 27	AC9	C	191	196	Right-handed alpha
Helix 28	AD1	C	211	223	Right-handed alpha
Helix 29	AD2	C	245	251	Right-handed alpha
Helix 30	AD3	C	260	265	Right-handed alpha
Helix 31	AD4	C	266	268	Right-handed 310
Helix 32	AD5	C	283	295	Right-handed alpha
Helix 33	AD6	C	314	321	Right-handed alpha

There are 11 sheets in PDB entry 5T5T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	13	first strand
Strand 2	A	16	24	anti-parallel
Strand 3	A	29	35	anti-parallel
Strand 4	A	41	48	anti-parallel
Strand 5	A	88	94	anti-parallel
Strand 6	A	79	84	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	100	first strand
Strand 2	A	145	147	anti-parallel
Strand 3	A	153	155	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	135	136	first strand
Strand 2	A	162	163	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	396	398	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	248	257	anti-parallel
Strand 4	B	260	269	anti-parallel
Strand 5	C	44	51	parallel
Strand 6	C	71	74	parallel
Strand 7	C	81	85	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	423	426	first strand
Strand 2	A	431	437	anti-parallel
Strand 3	A	444	453	anti-parallel
Strand 4	A	459	466	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	84	first strand
Strand 2	B	112	118	anti-parallel
Strand 3	B	106	107	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	104	first strand
Strand 2	B	91	95	anti-parallel
Strand 3	B	121	129	anti-parallel
Strand 4	B	132	134	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	104	first strand
Strand 2	B	91	95	anti-parallel
Strand 3	B	121	129	anti-parallel
Strand 4	B	149	155	anti-parallel
Strand 5	B	141	143	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	155	first strand
Strand 2	C	162	167	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	206	207	first strand
Strand 2	C	226	230	parallel
Strand 3	C	236	241	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	277	278	first strand
Strand 2	C	298	302	parallel
Strand 3	C	308	313	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5T5T

Analysis of interatomic Contacts of Structural Units in PDB entry:
5T5T