Analysis of interatomic Contacts of Structural Units in PDB entry:
5T5U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5T5U entry

There is 1 chain in PDB entry 5T5U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 101LEU 492
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5T5U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
132 147Right-handed alpha
Helix 2
AA2
A
160 169Right-handed alpha
Helix 3
AA3
A
174 176Right-handed 310
Helix 4
AA4
A
219 222Right-handed 310
Helix 5
AA5
A
225 241Right-handed alpha
Helix 6
AA6
A
269 276Right-handed alpha
Helix 7
AA7
A
286 295Right-handed alpha
Helix 8
AA8
A
309 311Right-handed 310
Helix 9
AA9
A
312 325Right-handed alpha
Helix 10
AB1
A
334 343Right-handed alpha
Helix 11
AB2
A
401 405Right-handed 310
Helix 12
AB3
A
406 428Right-handed alpha
Helix 13
AB4
A
440 444Right-handed 310
Helix 14
AB5
A
480 484Right-handed 310
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There are 3 sheets in PDB entry 5T5U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 103first strand
Strand 2
A
464 465anti-parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 127first strand
Strand 2
A
178 183anti-parallel
Strand 3
A
189 202anti-parallel
Strand 4
A
205 217anti-parallel
Strand 5
A
246 250parallel
Strand 6
A
451 462anti-parallel
Strand 7
A
259 267anti-parallel
Strand 8
A
432 436anti-parallel
Strand 9
A
388 399parallel
Strand 10
A
367 380anti-parallel
Strand 11
A
354 360anti-parallel
Strand 12
A
305 307anti-parallel
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There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 158first strand
Strand 2
A
367 380anti-parallel
Strand 3
A
388 399anti-parallel
Strand 4
A
432 436parallel
Strand 5
A
259 267anti-parallel
Strand 6
A
451 462anti-parallel
Strand 7
A
246 250anti-parallel
Strand 8
A
205 217parallel
Strand 9
A
189 202anti-parallel
Strand 10
A
329 331anti-parallel
Strand 11
A
487 488parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il