Analysis of interatomic Contacts of Structural Units in PDB entry:
5T5V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5T5V entry

There is 1 chain in PDB entry 5T5V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 6	PHE 413

There are 89 helices in PDB entry 5T5V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	21	Right-handed 310
Helix 2	AA2	A	31	36	Right-handed 310
Helix 3	AA3	A	133	137	Right-handed 310
Helix 4	AA4	A	155	157	Right-handed 310
Helix 5	AA5	A	158	171	Right-handed alpha
Helix 6	AA6	A	198	202	Right-handed 310
Helix 7	AA7	A	241	245	Right-handed 310
Helix 8	AA8	A	250	253	Right-handed 310
Helix 9	AA9	A	254	265	Right-handed alpha
Helix 10	AB1	A	265	276	Right-handed alpha
Helix 11	AB2	A	285	291	Right-handed alpha
Helix 12	AB3	A	292	294	Right-handed 310
Helix 13	AB4	A	300	308	Right-handed alpha
Helix 14	AB5	A	312	316	Right-handed 310
Helix 15	AB6	A	330	334	Right-handed 310
Helix 16	AB7	A	338	341	Right-handed 310
Helix 17	AB8	A	342	353	Right-handed alpha
Helix 18	AB9	A	372	377	Right-handed alpha
Helix 19	AC1	A	384	388	Right-handed 310
Helix 20	AC2	A	394	401	Right-handed alpha
Helix 21	AC3	A	409	422	Right-handed alpha
Helix 22	AC4	A	473	497	Right-handed alpha
Helix 23	AC5	A	503	518	Right-handed alpha
Helix 24	AC6	A	522	529	Right-handed alpha
Helix 25	AC7	A	530	533	Right-handed 310
Helix 26	AC8	A	534	546	Right-handed alpha
Helix 27	AC9	A	551	557	Right-handed alpha
Helix 28	AD1	A	559	561	Right-handed 310
Helix 29	AD2	A	562	572	Right-handed alpha
Helix 30	AD3	A	573	574	Right-handed 310
Helix 31	AD4	A	575	579	Right-handed 310
Helix 32	AD5	A	580	588	Right-handed alpha
Helix 33	AD6	A	608	629	Right-handed alpha
Helix 34	AD7	A	630	632	Right-handed 310
Helix 35	AD8	A	635	641	Right-handed alpha
Helix 36	AD9	A	642	655	Right-handed alpha
Helix 37	AE1	A	657	661	Right-handed 310
Helix 38	AE2	A	671	687	Right-handed alpha
Helix 39	AE3	A	687	695	Right-handed alpha
Helix 40	AE4	A	696	702	Right-handed alpha
Helix 41	AE5	A	720	729	Right-handed alpha
Helix 42	AE6	A	729	738	Right-handed alpha
Helix 43	AE7	A	740	755	Right-handed alpha
Helix 44	AE8	A	775	802	Right-handed alpha
Helix 45	AE9	A	805	810	Right-handed alpha
Helix 46	AF1	B	18	21	Right-handed 310
Helix 47	AF2	B	31	36	Right-handed 310
Helix 48	AF3	B	133	137	Right-handed 310
Helix 49	AF4	B	155	157	Right-handed 310
Helix 50	AF5	B	158	171	Right-handed alpha
Helix 51	AF6	B	198	202	Right-handed 310
Helix 52	AF7	B	241	245	Right-handed 310
Helix 53	AF8	B	250	253	Right-handed 310
Helix 54	AF9	B	254	265	Right-handed alpha
Helix 55	AG1	B	265	276	Right-handed alpha
Helix 56	AG2	B	285	291	Right-handed alpha
Helix 57	AG3	B	300	308	Right-handed alpha
Helix 58	AG4	B	312	316	Right-handed 310
Helix 59	AG5	B	330	334	Right-handed 310
Helix 60	AG6	B	338	341	Right-handed 310
Helix 61	AG7	B	342	353	Right-handed alpha
Helix 62	AG8	B	372	377	Right-handed alpha
Helix 63	AG9	B	384	388	Right-handed 310
Helix 64	AH1	B	394	401	Right-handed alpha
Helix 65	AH2	B	409	422	Right-handed alpha
Helix 66	AH3	B	472	497	Right-handed alpha
Helix 67	AH4	B	503	518	Right-handed alpha
Helix 68	AH5	B	522	529	Right-handed alpha
Helix 69	AH6	B	530	533	Right-handed 310
Helix 70	AH7	B	534	546	Right-handed alpha
Helix 71	AH8	B	551	557	Right-handed alpha
Helix 72	AH9	B	559	561	Right-handed 310
Helix 73	AI1	B	562	572	Right-handed alpha
Helix 74	AI2	B	573	574	Right-handed 310
Helix 75	AI3	B	575	579	Right-handed 310
Helix 76	AI4	B	580	588	Right-handed alpha
Helix 77	AI5	B	608	633	Right-handed alpha
Helix 78	AI6	B	635	641	Right-handed alpha
Helix 79	AI7	B	642	655	Right-handed alpha
Helix 80	AI8	B	657	661	Right-handed 310
Helix 81	AI9	B	671	687	Right-handed alpha
Helix 82	AJ1	B	687	695	Right-handed alpha
Helix 83	AJ2	B	696	702	Right-handed alpha
Helix 84	AJ3	B	720	729	Right-handed alpha
Helix 85	AJ4	B	729	738	Right-handed alpha
Helix 86	AJ5	B	740	755	Right-handed alpha
Helix 87	AJ6	B	775	801	Right-handed alpha
Helix 88	AJ7	B	802	804	Right-handed 310
Helix 89	AJ8	B	805	810	Right-handed alpha

There are 14 sheets in PDB entry 5T5V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	67	first strand
Strand 2	A	79	86	anti-parallel
Strand 3	A	7	16	anti-parallel
Strand 4	A	107	114	anti-parallel
Strand 5	A	123	131	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	58	first strand
Strand 2	A	40	50	anti-parallel
Strand 3	A	62	63	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	58	first strand
Strand 2	A	40	50	anti-parallel
Strand 3	A	94	101	anti-parallel
Strand 4	A	141	144	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	187	first strand
Strand 2	A	217	218	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	297	298	first strand
Strand 2	A	324	326	anti-parallel
Strand 3	A	318	319	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	360	361	first strand
Strand 2	A	404	408	anti-parallel
Strand 3	A	430	437	anti-parallel
Strand 4	A	443	451	anti-parallel
Strand 5	A	465	467	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	591	593	first strand
Strand 2	A	601	603	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	68	first strand
Strand 2	B	79	86	anti-parallel
Strand 3	B	7	16	anti-parallel
Strand 4	B	107	115	anti-parallel
Strand 5	B	122	131	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	58	first strand
Strand 2	B	40	50	anti-parallel
Strand 3	B	62	63	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	58	first strand
Strand 2	B	40	50	anti-parallel
Strand 3	B	94	101	anti-parallel
Strand 4	B	141	144	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	187	first strand
Strand 2	B	217	218	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	297	298	first strand
Strand 2	B	324	325	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	360	361	first strand
Strand 2	B	404	408	anti-parallel
Strand 3	B	430	437	anti-parallel
Strand 4	B	443	452	anti-parallel
Strand 5	B	463	467	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	591	593	first strand
Strand 2	B	601	603	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5T5V

Analysis of interatomic Contacts of Structural Units in PDB entry:
5T5V