Analysis of interatomic Contacts of Structural Units in PDB entry:
5T5W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5T5W entry

There are 3 chains in PDB entry 5T5W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 20THR 217
B
 PRO 6GLU 201
C
 CYS 4GLU 163
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5T5W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
106 111Right-handed alpha
Helix 2
AA2
A
144 149Right-handed alpha
Helix 3
AA3
B
99 103Right-handed alpha
Helix 4
AA4
C
6 11Right-handed 310
Helix 5
AA5
C
13 32Right-handed alpha
Helix 6
AA6
C
48 52Right-handed 310
Helix 7
AA7
C
56 79Right-handed alpha
Helix 8
AA8
C
82 102Right-handed alpha
Helix 9
AA9
C
116 127Right-handed alpha
Helix 10
AB1
C
133 144Right-handed alpha
Helix 11
AB2
C
144 151Right-handed alpha
Helix 12
AB3
C
151 158Right-handed alpha
Helix 13
AB4
C
159 162Right-handed 310
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There are 12 sheets in PDB entry 5T5W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 32first strand
Strand 2
A
35 41anti-parallel
Strand 3
A
73 75anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 69first strand
Strand 2
A
51 57anti-parallel
Strand 3
A
85 93anti-parallel
Strand 4
A
96 97anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 69first strand
Strand 2
A
51 57anti-parallel
Strand 3
A
85 93anti-parallel
Strand 4
A
101 105anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 123first strand
Strand 2
A
126 132anti-parallel
Strand 3
A
175 177anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 169first strand
Strand 2
A
153 160anti-parallel
Strand 3
A
186 195anti-parallel
Strand 4
A
200 201anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 169first strand
Strand 2
A
153 160anti-parallel
Strand 3
A
186 195anti-parallel
Strand 4
A
208 211anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 15first strand
Strand 2
B
18 24anti-parallel
Strand 3
B
61 63anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 50first strand
Strand 2
B
35 41anti-parallel
Strand 3
B
75 82anti-parallel
Strand 4
B
92 93anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 50first strand
Strand 2
B
35 41anti-parallel
Strand 3
B
75 82anti-parallel
Strand 4
B
97 98anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
109 115first strand
Strand 2
B
118 124anti-parallel
Strand 3
B
162 165anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 152first strand
Strand 2
B
136 144anti-parallel
Strand 3
B
173 183anti-parallel
Strand 4
B
187 189anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 157first strand
Strand 2
B
136 144anti-parallel
Strand 3
B
173 183anti-parallel
Strand 4
B
196 199anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il