Analysis of interatomic Contacts of Structural Units in PDB entry:
5T6C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5T6C entry

There is 1 chain in PDB entry 5T6C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 101LEU 492
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5T6C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
108 112Right-handed 310
Helix 2
AA2
A
132 147Right-handed alpha
Helix 3
AA3
A
160 169Right-handed alpha
Helix 4
AA4
A
174 176Right-handed 310
Helix 5
AA5
A
219 222Right-handed 310
Helix 6
AA6
A
225 240Right-handed alpha
Helix 7
AA7
A
269 276Right-handed alpha
Helix 8
AA8
A
286 295Right-handed alpha
Helix 9
AA9
A
309 311Right-handed 310
Helix 10
AB1
A
312 325Right-handed alpha
Helix 11
AB2
A
334 343Right-handed alpha
Helix 12
AB3
A
401 405Right-handed 310
Helix 13
AB4
A
406 428Right-handed alpha
Helix 14
AB5
A
440 444Right-handed 310
Helix 15
AB6
A
480 484Right-handed 310
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There are 5 sheets in PDB entry 5T6C. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 127first strand
Strand 2
A
178 183anti-parallel
Strand 3
A
189 202anti-parallel
Strand 4
A
205 213anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 158first strand
Strand 2
A
373 380anti-parallel
Strand 3
A
388 394anti-parallel
Strand 4
A
432 436parallel
Strand 5
A
263 267anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 202first strand
Strand 2
A
329 331anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 250first strand
Strand 2
A
456 462anti-parallel
Strand 3
A
259 262anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 307first strand
Strand 2
A
354 360anti-parallel
Strand 3
A
367 374anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il