Analysis of interatomic Contacts of Structural Units in PDB entry:
5T6E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5T6E entry

There is 1 chain in PDB entry 5T6E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 101LEU 492
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 5T6E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
109 111Right-handed 310
Helix 2
2
A
133 146Right-handed alpha
Helix 3
3
A
161 168Right-handed alpha
Helix 4
4
A
175 177Right-handed 310
Helix 5
5
A
219 221Right-handed 310
Helix 6
6
A
227 241Right-handed alpha
Helix 7
7
A
270 275Right-handed alpha
Helix 8
8
A
287 294Right-handed alpha
Helix 9
9
A
310 326Right-handed 310
Helix 10
10
A
335 342Right-handed alpha
Helix 11
11
A
400 404Right-handed 310
Helix 12
12
A
407 427Right-handed alpha
Helix 13
13
A
441 443Right-handed 310
Helix 14
14
A
481 483Right-handed 310
Back to top of page

There are 5 sheets in PDB entry 5T6E. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 127first strand
Strand 2
A
178 183anti-parallel
Strand 3
A
189 202anti-parallel
Strand 4
A
205 213anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 158first strand
Strand 2
A
373 380anti-parallel
Strand 3
A
388 394anti-parallel
Strand 4
A
432 436parallel
Strand 5
A
263 267anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 202first strand
Strand 2
A
329 331anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 250first strand
Strand 2
A
456 462anti-parallel
Strand 3
A
259 262anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 307first strand
Strand 2
A
354 360anti-parallel
Strand 3
A
367 374anti-parallel
Strand 4
A
397 399anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il