Analysis of interatomic Contacts of Structural Units in PDB entry:
5T6L

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5T6L entry

There are 6 chains in PDB entry 5T6L (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	GLU 1	LYS 214
L	TYR 2	GLU 211
A	GLU 1	LYS 214
B	TYR 2	GLU 211
G	ASN 7	ILE 159
I	GLN 10	GLU 161

There are 34 helices in PDB entry 5T6L. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	52	54	Right-handed 310
Helix 2	AA2	H	73	75	Right-handed 310
Helix 3	AA3	H	83	87	Right-handed 310
Helix 4	AA4	H	185	189	Right-handed 310
Helix 5	AA5	H	201	204	Right-handed 310
Helix 6	AA6	L	26	30	Right-handed 310
Helix 7	AA7	L	79	83	Right-handed 310
Helix 8	AA8	L	122	128	Right-handed alpha
Helix 9	AA9	L	182	187	Right-handed alpha
Helix 10	AB1	A	28	32	Right-handed 310
Helix 11	AB2	A	52	54	Right-handed 310
Helix 12	AB3	A	61	64	Right-handed 310
Helix 13	AB4	A	73	75	Right-handed 310
Helix 14	AB5	A	83	87	Right-handed 310
Helix 15	AB6	A	156	158	Right-handed 310
Helix 16	AB7	A	201	204	Right-handed 310
Helix 17	AB8	B	26	30	Right-handed 310
Helix 18	AB9	B	79	83	Right-handed 310
Helix 19	AC1	B	122	128	Right-handed alpha
Helix 20	AC2	B	182	189	Right-handed alpha
Helix 21	AC3	G	15	17	Right-handed 310
Helix 22	AC4	G	27	42	Right-handed alpha
Helix 23	AC5	G	48	60	Right-handed alpha
Helix 24	AC6	G	77	81	Right-handed 310
Helix 25	AC7	G	119	135	Right-handed alpha
Helix 26	AC8	G	136	144	Right-handed alpha
Helix 27	AC9	G	147	159	Right-handed alpha
Helix 28	AD1	I	15	17	Right-handed 310
Helix 29	AD2	I	27	42	Right-handed alpha
Helix 30	AD3	I	48	60	Right-handed alpha
Helix 31	AD4	I	77	81	Right-handed 310
Helix 32	AD5	I	119	134	Right-handed alpha
Helix 33	AD6	I	136	144	Right-handed alpha
Helix 34	AD7	I	147	161	Right-handed alpha

There are 25 sheets in PDB entry 5T6L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	98	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	46	51	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	98	anti-parallel
Strand 4	H	100	103	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	120	124	first strand
Strand 2	H	136	145	anti-parallel
Strand 3	H	176	184	anti-parallel
Strand 4	H	169	170	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	151	154	first strand
Strand 2	H	195	200	anti-parallel
Strand 3	H	205	210	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	6	first strand
Strand 2	L	19	24	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	14	first strand
Strand 2	L	102	107	parallel
Strand 3	L	84	91	anti-parallel
Strand 4	L	34	38	anti-parallel
Strand 5	L	45	48	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	14	first strand
Strand 2	L	102	107	parallel
Strand 3	L	84	91	anti-parallel
Strand 4	L	96	98	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	115	119	first strand
Strand 2	L	131	140	anti-parallel
Strand 3	L	173	181	anti-parallel
Strand 4	L	160	162	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	115	119	first strand
Strand 2	L	131	140	anti-parallel
Strand 3	L	173	181	anti-parallel
Strand 4	L	166	167	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	154	156	first strand
Strand 2	L	146	151	anti-parallel
Strand 3	L	192	198	anti-parallel
Strand 4	L	201	207	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	7	first strand
Strand 2	A	18	25	anti-parallel
Strand 3	A	77	82	anti-parallel
Strand 4	A	67	72	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	107	111	parallel
Strand 3	A	88	98	anti-parallel
Strand 4	A	33	39	anti-parallel
Strand 5	A	46	51	anti-parallel
Strand 6	A	57	59	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	107	111	parallel
Strand 3	A	88	98	anti-parallel
Strand 4	A	100	103	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	124	first strand
Strand 2	A	137	145	anti-parallel
Strand 3	A	176	183	anti-parallel
Strand 4	A	163	165	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	124	first strand
Strand 2	A	137	145	anti-parallel
Strand 3	A	176	183	anti-parallel
Strand 4	A	169	170	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	154	first strand
Strand 2	A	195	200	anti-parallel
Strand 3	A	205	210	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	6	first strand
Strand 2	B	19	24	anti-parallel
Strand 3	B	70	75	anti-parallel
Strand 4	B	62	67	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	14	first strand
Strand 2	B	102	107	parallel
Strand 3	B	84	91	anti-parallel
Strand 4	B	34	38	anti-parallel
Strand 5	B	45	48	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	14	first strand
Strand 2	B	102	107	parallel
Strand 3	B	84	91	anti-parallel
Strand 4	B	96	98	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	119	first strand
Strand 2	B	131	140	anti-parallel
Strand 3	B	173	181	anti-parallel
Strand 4	B	160	162	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	119	first strand
Strand 2	B	131	140	anti-parallel
Strand 3	B	173	181	anti-parallel
Strand 4	B	166	167	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	156	first strand
Strand 2	B	146	151	anti-parallel
Strand 3	B	192	198	anti-parallel
Strand 4	B	201	207	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	19	22	first strand
Strand 2	G	85	97	parallel
Strand 3	G	107	116	anti-parallel
Strand 4	G	70	72	parallel
Strand 5	G	63	64	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	19	22	first strand
Strand 2	I	85	97	parallel
Strand 3	I	107	116	anti-parallel
Strand 4	I	70	72	parallel
Strand 5	I	63	64	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5T6L

Analysis of interatomic Contacts of Structural Units in PDB entry:
5T6L