Analysis of interatomic Contacts of Structural Units in PDB entry:
5T6O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5T6O entry

There is 1 chain in PDB entry 5T6O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 201ALA 589
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5T6O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
249 255Right-handed 310
Helix 2
AA2
A
256 259Right-handed 310
Helix 3
AA3
A
260 268Right-handed alpha
Helix 4
AA4
A
281 285Right-handed 310
Helix 5
AA5
A
288 296Right-handed alpha
Helix 6
AA6
A
296 309Right-handed alpha
Helix 7
AA7
A
319 335Right-handed alpha
Helix 8
AA8
A
358 362Right-handed 310
Helix 9
AA9
A
381 385Right-handed 310
Helix 10
AB1
A
401 416Right-handed alpha
Helix 11
AB2
A
419 428Right-handed alpha
Helix 12
AB3
A
434 444Right-handed alpha
Helix 13
AB4
A
464 468Right-handed 310
Helix 14
AB5
A
484 490Right-handed alpha
Helix 15
AB6
A
491 494Right-handed 310
Helix 16
AB7
A
507 513Right-handed alpha
Helix 17
AB8
A
515 519Right-handed 310
Helix 18
AB9
A
532 540Right-handed alpha
Helix 19
AC1
A
547 559Right-handed alpha
Helix 20
AC2
A
583 587Right-handed 310
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There are 4 sheets in PDB entry 5T6O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
541 544first strand
Strand 2
A
522 525anti-parallel
Strand 3
A
499 504anti-parallel
Strand 4
A
472 477parallel
Strand 5
A
340 346parallel
Strand 6
A
313 318parallel
Strand 7
A
240 243parallel
Strand 8
A
272 277parallel
Strand 9
A
223 228anti-parallel
Strand 10
A
214 219anti-parallel
Strand 11
A
578 579anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 236first strand
Strand 2
A
562 564anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
388 391first strand
Strand 2
A
430 433anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 458first strand
Strand 2
A
461 462anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il