Analysis of interatomic Contacts of Structural Units in PDB entry:
5T79


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5T79 entry

There is 1 chain in PDB entry 5T79 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 330
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5T79. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 13Right-handed alpha
Helix 2
AA2
A
41 55Right-handed alpha
Helix 3
AA3
A
71 85Right-handed alpha
Helix 4
AA4
A
86 92Right-handed 310
Helix 5
AA5
A
112 128Right-handed alpha
Helix 6
AA6
A
145 159Right-handed alpha
Helix 7
AA7
A
171 186Right-handed alpha
Helix 8
AA8
A
201 205Right-handed 310
Helix 9
AA9
A
206 215Right-handed alpha
Helix 10
AB1
A
224 228Right-handed 310
Helix 11
AB2
A
256 273Right-handed alpha
Helix 12
AB3
A
276 286Right-handed alpha
Helix 13
AB4
A
300 309Right-handed alpha
Helix 14
AB5
A
310 313Right-handed 310
Helix 15
AB6
A
317 330Right-handed alpha
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There are 2 sheets in PDB entry 5T79. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 17first strand
Strand 2
A
24 26anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 31first strand
Strand 2
A
59 61parallel
Strand 3
A
93 98parallel
Strand 4
A
132 137parallel
Strand 5
A
162 168parallel
Strand 6
A
191 193parallel
Strand 7
A
217 220parallel
Strand 8
A
293 296parallel
Strand 9
A
28 31parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il