Analysis of interatomic Contacts of Structural Units in PDB entry:
5T7F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5T7F entry

There are 2 chains in PDB entry 5T7F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 109	SER 1026
B	VAL 109	ALA 1022

There are 77 helices in PDB entry 5T7F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	109	122	Right-handed alpha
Helix 2	AA2	A	124	131	Right-handed alpha
Helix 3	AA3	A	133	155	Right-handed alpha
Helix 4	AA4	A	158	167	Right-handed alpha
Helix 5	AA5	A	212	228	Right-handed alpha
Helix 6	AA6	A	235	237	Right-handed 310
Helix 7	AA7	A	255	258	Right-handed 310
Helix 8	AA8	A	259	269	Right-handed alpha
Helix 9	AA9	A	279	288	Right-handed alpha
Helix 10	AB1	A	382	384	Right-handed 310
Helix 11	AB2	A	487	493	Right-handed alpha
Helix 12	AB3	A	512	516	Right-handed 310
Helix 13	AB4	A	524	534	Right-handed alpha
Helix 14	AB5	A	534	542	Right-handed alpha
Helix 15	AB6	A	545	551	Right-handed alpha
Helix 16	AB7	A	557	569	Right-handed alpha
Helix 17	AB8	A	575	583	Right-handed alpha
Helix 18	AB9	A	589	599	Right-handed alpha
Helix 19	AC1	A	604	619	Right-handed alpha
Helix 20	AC2	A	627	640	Right-handed alpha
Helix 21	AC3	A	640	653	Right-handed alpha
Helix 22	AC4	A	657	675	Right-handed alpha
Helix 23	AC5	A	675	703	Right-handed alpha
Helix 24	AC6	A	707	720	Right-handed alpha
Helix 25	AC7	A	721	728	Right-handed alpha
Helix 26	AC8	A	746	749	Right-handed 310
Helix 27	AC9	A	768	773	Right-handed 310
Helix 28	AD1	A	784	803	Right-handed alpha
Helix 29	AD2	A	834	838	Right-handed alpha
Helix 30	AD3	A	850	852	Right-handed 310
Helix 31	AD4	A	853	863	Right-handed alpha
Helix 32	AD5	A	864	866	Right-handed 310
Helix 33	AD6	A	867	890	Right-handed alpha
Helix 34	AD7	A	935	943	Right-handed alpha
Helix 35	AD8	A	950	970	Right-handed alpha
Helix 36	AD9	A	970	981	Right-handed alpha
Helix 37	AE1	A	982	985	Right-handed 310
Helix 38	AE2	A	991	1003	Right-handed alpha
Helix 39	AE3	A	1007	1025	Right-handed alpha
Helix 40	AE4	B	110	122	Right-handed alpha
Helix 41	AE5	B	124	132	Right-handed alpha
Helix 42	AE6	B	133	155	Right-handed alpha
Helix 43	AE7	B	158	167	Right-handed alpha
Helix 44	AE8	B	212	228	Right-handed alpha
Helix 45	AE9	B	235	237	Right-handed 310
Helix 46	AF1	B	255	258	Right-handed 310
Helix 47	AF2	B	259	269	Right-handed alpha
Helix 48	AF3	B	279	289	Right-handed alpha
Helix 49	AF4	B	382	384	Right-handed 310
Helix 50	AF5	B	487	495	Right-handed alpha
Helix 51	AF6	B	510	515	Right-handed alpha
Helix 52	AF7	B	525	534	Right-handed alpha
Helix 53	AF8	B	534	542	Right-handed alpha
Helix 54	AF9	B	545	551	Right-handed alpha
Helix 55	AG1	B	557	569	Right-handed alpha
Helix 56	AG2	B	575	582	Right-handed alpha
Helix 57	AG3	B	589	595	Right-handed alpha
Helix 58	AG4	B	596	601	Right-handed 310
Helix 59	AG5	B	604	619	Right-handed alpha
Helix 60	AG6	B	627	640	Right-handed alpha
Helix 61	AG7	B	640	653	Right-handed alpha
Helix 62	AG8	B	657	675	Right-handed alpha
Helix 63	AG9	B	675	703	Right-handed alpha
Helix 64	AH1	B	707	720	Right-handed alpha
Helix 65	AH2	B	721	729	Right-handed alpha
Helix 66	AH3	B	746	749	Right-handed 310
Helix 67	AH4	B	784	803	Right-handed alpha
Helix 68	AH5	B	834	838	Right-handed alpha
Helix 69	AH6	B	850	852	Right-handed 310
Helix 70	AH7	B	853	863	Right-handed alpha
Helix 71	AH8	B	866	889	Right-handed alpha
Helix 72	AH9	B	935	943	Right-handed alpha
Helix 73	AI1	B	949	970	Right-handed alpha
Helix 74	AI2	B	970	981	Right-handed alpha
Helix 75	AI3	B	982	985	Right-handed 310
Helix 76	AI4	B	991	1003	Right-handed alpha
Helix 77	AI5	B	1013	1022	Right-handed alpha

There are 16 sheets in PDB entry 5T7F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	208	first strand
Strand 2	A	189	196	anti-parallel
Strand 3	A	273	278	parallel
Strand 4	A	239	243	anti-parallel
Strand 5	A	249	250	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	373	380	first strand
Strand 2	A	322	330	anti-parallel
Strand 3	A	470	474	anti-parallel
Strand 4	A	436	440	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	358	359	first strand
Strand 2	A	340	348	anti-parallel
Strand 3	A	363	364	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	358	359	first strand
Strand 2	A	340	348	anti-parallel
Strand 3	A	389	397	anti-parallel
Strand 4	A	416	424	anti-parallel
Strand 5	A	442	443	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	731	733	first strand
Strand 2	A	736	741	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	743	744	first strand
Strand 2	A	759	764	anti-parallel
Strand 3	A	750	751	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	743	744	first strand
Strand 2	A	759	764	anti-parallel
Strand 3	A	775	780	anti-parallel
Strand 4	A	822	826	anti-parallel
Strand 5	A	815	819	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	831	833	first strand
Strand 2	A	899	902	anti-parallel
Strand 3	A	907	909	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	208	first strand
Strand 2	B	189	196	anti-parallel
Strand 3	B	273	278	parallel
Strand 4	B	239	243	anti-parallel
Strand 5	B	249	250	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	375	380	first strand
Strand 2	B	322	327	anti-parallel
Strand 3	B	472	474	anti-parallel
Strand 4	B	436	438	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	353	first strand
Strand 2	B	340	349	anti-parallel
Strand 3	B	363	364	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	353	first strand
Strand 2	B	340	349	anti-parallel
Strand 3	B	389	397	anti-parallel
Strand 4	B	416	424	anti-parallel
Strand 5	B	442	443	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	731	733	first strand
Strand 2	B	736	741	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	743	744	first strand
Strand 2	B	759	764	anti-parallel
Strand 3	B	750	751	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	743	744	first strand
Strand 2	B	759	764	anti-parallel
Strand 3	B	775	780	anti-parallel
Strand 4	B	822	826	anti-parallel
Strand 5	B	815	819	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	831	833	first strand
Strand 2	B	899	902	anti-parallel
Strand 3	B	907	909	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5T7F

Analysis of interatomic Contacts of Structural Units in PDB entry:
5T7F