Analysis of interatomic Contacts of Structural Units in PDB entry:
5T81


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5T81 entry

There are 2 chains in PDB entry 5T81 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP -5GLN 497
B
 ASP -3GLU 496
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 5T81. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-3 14Right-handed alpha
Helix 2
AA2
A
34 44Right-handed alpha
Helix 3
AA3
A
44 55Right-handed alpha
Helix 4
AA4
A
64 68Right-handed 310
Helix 5
AA5
A
75 84Right-handed alpha
Helix 6
AA6
A
107 122Right-handed alpha
Helix 7
AA7
A
123 125Right-handed 310
Helix 8
AA8
A
154 170Right-handed alpha
Helix 9
AA9
A
206 223Right-handed alpha
Helix 10
AB1
A
234 246Right-handed alpha
Helix 11
AB2
A
248 263Right-handed alpha
Helix 12
AB3
A
276 280Right-handed 310
Helix 13
AB4
A
293 306Right-handed alpha
Helix 14
AB5
A
310 326Right-handed alpha
Helix 15
AB6
A
370 387Right-handed alpha
Helix 16
AB7
A
394 404Right-handed alpha
Helix 17
AB8
A
471 492Right-handed alpha
Helix 18
AB9
A
493 497Right-handed 310
Helix 19
AC1
B
-2 13Right-handed alpha
Helix 20
AC2
B
34 44Right-handed alpha
Helix 21
AC3
B
44 53Right-handed alpha
Helix 22
AC4
B
75 84Right-handed alpha
Helix 23
AC5
B
107 122Right-handed alpha
Helix 24
AC6
B
123 125Right-handed 310
Helix 25
AC7
B
154 170Right-handed alpha
Helix 26
AC8
B
206 223Right-handed alpha
Helix 27
AC9
B
234 246Right-handed alpha
Helix 28
AD1
B
248 263Right-handed alpha
Helix 29
AD2
B
293 307Right-handed alpha
Helix 30
AD3
B
310 326Right-handed alpha
Helix 31
AD4
B
347 351Right-handed 310
Helix 32
AD5
B
370 388Right-handed alpha
Helix 33
AD6
B
394 404Right-handed alpha
Helix 34
AD7
B
471 489Right-handed alpha
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There are 8 sheets in PDB entry 5T81. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 20first strand
Strand 2
A
23 27anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 73first strand
Strand 2
A
134 137anti-parallel
Strand 3
A
127 130anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 149first strand
Strand 2
A
182 188parallel
Strand 3
A
193 201anti-parallel
Strand 4
A
96 104anti-parallel
Strand 5
A
435 442anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 292first strand
Strand 2
A
458 466anti-parallel
Strand 3
A
448 455anti-parallel
Strand 4
A
414 418parallel
Strand 5
A
331 338parallel
Strand 6
A
357 364anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 20first strand
Strand 2
B
23 27anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 73first strand
Strand 2
B
134 137anti-parallel
Strand 3
B
127 130anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 149first strand
Strand 2
B
182 188parallel
Strand 3
B
193 201anti-parallel
Strand 4
B
96 104anti-parallel
Strand 5
B
434 442anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
285 292first strand
Strand 2
B
458 466anti-parallel
Strand 3
B
448 455anti-parallel
Strand 4
B
414 418parallel
Strand 5
B
331 338parallel
Strand 6
B
357 364anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il