Analysis of interatomic Contacts of Structural Units in PDB entry:
5T86


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5T86 entry

There are 2 chains in PDB entry 5T86 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 152ARG 255
I
 THR 2LYS 124
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 5T86. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
159 172Right-handed alpha
Helix 2
AA2
A
242 254Right-handed alpha
Helix 3
AA3
I
3 11Right-handed alpha
Helix 4
AA4
I
12 15Right-handed 310
Helix 5
AA5
I
20 32Right-handed alpha
Helix 6
AA6
I
42 45Right-handed 310
Helix 7
AA7
I
52 60Right-handed alpha
Helix 8
AA8
I
83 89Right-handed alpha
Helix 9
AA9
I
89 95Right-handed alpha
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There are 3 sheets in PDB entry 5T86. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 182first strand
Strand 2
A
194 198anti-parallel
Strand 3
A
204 211anti-parallel
Strand 4
A
215 222anti-parallel
Strand 5
A
233 238anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
16 18first strand
Strand 2
I
78 82anti-parallel
Strand 3
I
66 71anti-parallel
Strand 4
I
100 103anti-parallel
Strand 5
I
107 111anti-parallel
Strand 6
I
118 122anti-parallel
Strand 7
I
47 50anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
35 36first strand
Strand 2
I
39 40anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il