Analysis of interatomic Contacts of Structural Units in PDB entry:
5T87


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5T87 entry

There are 8 chains in PDB entry 5T87 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2SER 115
B
 THR 2MSE 114
C
 THR 2ASP 116
D
 THR 2ASP 116
E
 GLY 169ARG 237
F
 ARG 168PRO 241
G
 ARG 168LYS 242
H
 GLY 169LYS 238
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 5T87. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 14Right-handed 310
Helix 2
AA2
A
15 23Right-handed alpha
Helix 3
AA3
A
24 39Right-handed alpha
Helix 4
AA4
A
41 54Right-handed alpha
Helix 5
AA5
A
59 77Right-handed alpha
Helix 6
AA6
A
81 92Right-handed alpha
Helix 7
AA7
A
95 115Right-handed alpha
Helix 8
AA8
B
12 14Right-handed 310
Helix 9
AA9
B
15 23Right-handed alpha
Helix 10
AB1
B
24 39Right-handed alpha
Helix 11
AB2
B
41 54Right-handed alpha
Helix 12
AB3
B
59 77Right-handed alpha
Helix 13
AB4
B
81 92Right-handed alpha
Helix 14
AB5
B
98 114Right-handed alpha
Helix 15
AB6
C
12 14Right-handed 310
Helix 16
AB7
C
15 23Right-handed alpha
Helix 17
AB8
C
24 39Right-handed alpha
Helix 18
AB9
C
41 54Right-handed alpha
Helix 19
AC1
C
59 77Right-handed alpha
Helix 20
AC2
C
81 91Right-handed alpha
Helix 21
AC3
C
98 114Right-handed alpha
Helix 22
AC4
D
12 14Right-handed 310
Helix 23
AC5
D
15 23Right-handed alpha
Helix 24
AC6
D
24 39Right-handed alpha
Helix 25
AC7
D
41 54Right-handed alpha
Helix 26
AC8
D
59 77Right-handed alpha
Helix 27
AC9
D
81 92Right-handed alpha
Helix 28
AD1
D
95 114Right-handed alpha
Helix 29
AD2
E
172 179Right-handed alpha
Helix 30
AD3
E
217 221Right-handed 310
Helix 31
AD4
E
222 231Right-handed alpha
Helix 32
AD5
F
172 179Right-handed alpha
Helix 33
AD6
F
217 221Right-handed 310
Helix 34
AD7
F
222 232Right-handed alpha
Helix 35
AD8
G
172 179Right-handed alpha
Helix 36
AD9
G
217 221Right-handed 310
Helix 37
AE1
G
222 232Right-handed alpha
Helix 38
AE2
H
172 179Right-handed alpha
Helix 39
AE3
H
217 221Right-handed 310
Helix 40
AE4
H
222 232Right-handed alpha
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There are 4 sheets in PDB entry 5T87. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
E
210 216parallel
Strand 3
E
200 207anti-parallel
Strand 4
E
187 193anti-parallel
Strand 5
E
181 184anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 5first strand
Strand 2
F
210 216parallel
Strand 3
F
200 205anti-parallel
Strand 4
F
187 193anti-parallel
Strand 5
F
181 184anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 5first strand
Strand 2
G
210 216parallel
Strand 3
G
200 207anti-parallel
Strand 4
G
187 193anti-parallel
Strand 5
G
181 184anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 5first strand
Strand 2
H
210 216parallel
Strand 3
H
200 207anti-parallel
Strand 4
H
190 193anti-parallel
Strand 5
H
181 182anti-parallel
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