Analysis of interatomic Contacts of Structural Units in PDB entry:
5T89

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5T89 entry

There are 4 chains in PDB entry 5T89 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
V	GLU 13	LYS 108
W	GLU 13	LYS 108
X	PRO 32	THR 654
Y	ASP 31	THR 654

There are 13 helices in PDB entry 5T89. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	V	16	25	Right-handed alpha
Helix 2	AA2	V	35	39	Right-handed alpha
Helix 3	AA3	W	16	23	Right-handed alpha
Helix 4	AA4	W	35	39	Right-handed alpha
Helix 5	AA5	X	112	116	Right-handed 310
Helix 6	AA6	X	198	202	Right-handed 310
Helix 7	AA7	X	302	306	Right-handed 310
Helix 8	AA8	X	396	400	Right-handed 310
Helix 9	AA9	X	432	434	Right-handed 310
Helix 10	AB1	Y	98	102	Right-handed 310
Helix 11	AB2	Y	198	202	Right-handed 310
Helix 12	AB3	Y	396	400	Right-handed 310
Helix 13	AB4	Y	430	434	Right-handed 310

There are 32 sheets in PDB entry 5T89. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	27	34	first strand
Strand 2	V	51	58	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	46	48	first strand
Strand 2	V	66	83	anti-parallel
Strand 3	V	89	106	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	27	34	first strand
Strand 2	W	51	58	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	46	48	first strand
Strand 2	W	66	83	anti-parallel
Strand 3	W	89	106	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	33	34	first strand
Strand 2	X	50	55	anti-parallel
Strand 3	X	88	93	anti-parallel
Strand 4	X	73	76	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	60	62	first strand
Strand 2	X	103	108	anti-parallel
Strand 3	X	121	126	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	144	148	first strand
Strand 2	X	214	224	parallel
Strand 3	X	204	211	anti-parallel
Strand 4	X	167	171	anti-parallel
Strand 5	X	175	177	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	154	156	first strand
Strand 2	X	191	194	anti-parallel
Strand 3	X	184	187	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	231	235	first strand
Strand 2	X	248	256	anti-parallel
Strand 3	X	290	298	anti-parallel
Strand 4	X	276	282	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	240	241	first strand
Strand 2	X	319	327	parallel
Strand 3	X	307	314	anti-parallel
Strand 4	X	264	267	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	333	336	first strand
Strand 2	X	359	362	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	344	347	first strand
Strand 2	X	414	425	parallel
Strand 3	X	401	409	anti-parallel
Strand 4	X	366	369	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	351	356	first strand
Strand 2	X	389	394	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	429	430	first strand
Strand 2	X	454	457	anti-parallel
Strand 3	X	515	526	anti-parallel
Strand 4	X	450	451	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	429	430	first strand
Strand 2	X	454	457	anti-parallel
Strand 3	X	515	526	anti-parallel
Strand 4	X	501	512	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	443	444	first strand
Strand 2	X	543	552	parallel
Strand 3	X	531	538	anti-parallel
Strand 4	X	463	466	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	560	564	first strand
Strand 2	X	573	579	anti-parallel
Strand 3	X	617	623	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	588	592	first strand
Strand 2	X	632	638	anti-parallel
Strand 3	X	646	648	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	588	592	first strand
Strand 2	X	632	638	anti-parallel
Strand 3	X	651	652	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	33	34	first strand
Strand 2	Y	50	55	anti-parallel
Strand 3	Y	88	93	anti-parallel
Strand 4	Y	73	76	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	60	62	first strand
Strand 2	Y	103	108	anti-parallel
Strand 3	Y	121	126	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	144	148	first strand
Strand 2	Y	214	224	parallel
Strand 3	Y	204	211	anti-parallel
Strand 4	Y	167	171	anti-parallel
Strand 5	Y	176	177	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	154	156	first strand
Strand 2	Y	191	194	anti-parallel
Strand 3	Y	184	187	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	231	235	first strand
Strand 2	Y	248	256	anti-parallel
Strand 3	Y	290	298	anti-parallel
Strand 4	Y	276	282	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	240	241	first strand
Strand 2	Y	319	327	parallel
Strand 3	Y	307	314	anti-parallel
Strand 4	Y	263	267	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	333	336	first strand
Strand 2	Y	359	362	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	344	347	first strand
Strand 2	Y	414	425	parallel
Strand 3	Y	401	409	anti-parallel
Strand 4	Y	366	369	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	351	356	first strand
Strand 2	Y	389	394	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	450	456	first strand
Strand 2	Y	515	526	anti-parallel
Strand 3	Y	501	512	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	464	466	first strand
Strand 2	Y	531	539	anti-parallel
Strand 3	Y	542	550	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	560	564	first strand
Strand 2	Y	573	579	anti-parallel
Strand 3	Y	617	623	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	585	591	first strand
Strand 2	Y	633	639	anti-parallel
Strand 3	Y	647	651	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5T89

Analysis of interatomic Contacts of Structural Units in PDB entry:
5T89