Analysis of interatomic Contacts of Structural Units in PDB entry:
5T8S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5T8S entry

There are 2 chains in PDB entry 5T8S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LEU 389
B
 SER 2LEU 389
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5T8S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 35Right-handed alpha
Helix 2
AA2
A
64 77Right-handed alpha
Helix 3
AA3
A
80 84Right-handed 310
Helix 4
AA4
A
86 90Right-handed 310
Helix 5
AA5
A
100 108Right-handed alpha
Helix 6
AA6
A
138 157Right-handed alpha
Helix 7
AA7
A
199 211Right-handed alpha
Helix 8
AA8
A
211 216Right-handed alpha
Helix 9
AA9
A
217 221Right-handed 310
Helix 10
AB1
A
238 243Right-handed alpha
Helix 11
AB2
A
274 293Right-handed alpha
Helix 12
AB3
A
326 338Right-handed alpha
Helix 13
AB4
A
341 350Right-handed alpha
Helix 14
AB5
A
356 361Right-handed 310
Helix 15
AB6
A
372 376Right-handed 310
Helix 16
AB7
A
379 387Right-handed alpha
Helix 17
AB8
B
15 35Right-handed alpha
Helix 18
AB9
B
64 77Right-handed alpha
Helix 19
AC1
B
80 84Right-handed 310
Helix 20
AC2
B
138 157Right-handed alpha
Helix 21
AC3
B
199 211Right-handed alpha
Helix 22
AC4
B
211 216Right-handed alpha
Helix 23
AC5
B
217 221Right-handed 310
Helix 24
AC6
B
238 243Right-handed alpha
Helix 25
AC7
B
274 293Right-handed alpha
Helix 26
AC8
B
326 338Right-handed alpha
Helix 27
AC9
B
341 350Right-handed alpha
Helix 28
AD1
B
356 361Right-handed 310
Helix 29
AD2
B
372 376Right-handed 310
Helix 30
AD3
B
379 387Right-handed alpha
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There are 7 sheets in PDB entry 5T8S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 11first strand
Strand 2
A
163 176anti-parallel
Strand 3
A
182 194anti-parallel
Strand 4
A
226 229parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 94first strand
Strand 2
A
50 58parallel
Strand 3
A
39 47anti-parallel
Strand 4
A
245 246anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 130first strand
Strand 2
A
298 305anti-parallel
Strand 3
A
314 318anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 11first strand
Strand 2
B
163 176anti-parallel
Strand 3
B
182 194anti-parallel
Strand 4
B
226 229parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 94first strand
Strand 2
B
50 58parallel
Strand 3
B
97 99parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 94first strand
Strand 2
B
50 58parallel
Strand 3
B
39 47anti-parallel
Strand 4
B
245 246anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 130first strand
Strand 2
B
298 305anti-parallel
Strand 3
B
314 318anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il